bowmanr / scDNA_myeloid
Processing scripts for single cell DNA sequencing on the Tapestri platform
☆24Updated last year
Alternatives and similar repositories for scDNA_myeloid:
Users that are interested in scDNA_myeloid are comparing it to the libraries listed below
- A tool for removing doublets from single-cell RNA-seq data☆72Updated 4 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆42Updated 2 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆77Updated 2 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆43Updated last year
- Single cell RNA-seq analysis bundle☆34Updated 5 years ago
- mutation(barcode) caller for 10x single cell data☆44Updated 4 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- scRNA-seq cell type identification☆44Updated 5 years ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆33Updated last year
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆50Updated last year
- ☆53Updated 4 years ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated last year
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆47Updated 3 years ago
- ☆47Updated 2 months ago
- This package contains a reference-based function to infer the proportions of a priori known cell subtypes present in a sample representin…☆48Updated 4 months ago
- R implementation of GLIPH (Grouping of Lymphocyte Interactions by Paratope Hotspots), an algorithm developed by Glanville et al to identi…☆19Updated 2 years ago
- ☆18Updated last year
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 3 years ago
- Repo for Physalia course Analysis of Single Cell RNA-Seq data☆31Updated 5 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆43Updated last year
- ☆48Updated 4 years ago
- simpler single cell RNAseq data clustering☆40Updated 2 weeks ago
- A pipeline for scRNA-seq data analysis☆12Updated 2 weeks ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆74Updated 2 years ago
- Contains code to analyze the OneK1K data and perform eQTL mapping of 14 cell types☆26Updated 3 years ago
- ☆61Updated last year
- ☆78Updated last year
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆45Updated 3 years ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- Mouse cell atlas☆60Updated 4 years ago