joan-smith / comprehensive-tcga-survivalLinks
Comprehensive survival analyses on the TCGA data.
☆17Updated 3 years ago
Alternatives and similar repositories for comprehensive-tcga-survival
Users that are interested in comprehensive-tcga-survival are comparing it to the libraries listed below
Sorting:
- ☆48Updated 2 years ago
- Standalone shiny server container for viewing CellChat object☆12Updated 4 years ago
- epigenome analysis to rank transcription factors☆30Updated 2 years ago
- Relative Expression Ordering Analysis (REOA) package☆20Updated 2 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago
- Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously☆36Updated 2 years ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆38Updated 6 years ago
- Big data Regression for predicting DNase I hypersensitivity☆30Updated 10 months ago
- ☆30Updated 2 years ago
- ConsensusTME Gene Sets and R Script☆39Updated last year
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated 2 years ago
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆51Updated 7 years ago
- This repostory contains codes for Shimada et al., "A tool for browsing the Cancer Dependency Map reveals functional connections between g…☆13Updated 3 years ago
- Tumor Immune Single-cell Hub☆21Updated 4 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆43Updated 3 weeks ago
- ☆29Updated 6 years ago
- Transcriptomic tools to classify bladder tumours according to six published molecular classifications : Baylor, UNC, MDA, Lund, CIT-Curie…☆27Updated 2 years ago
- ☆34Updated 6 years ago
- PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data☆43Updated last year
- Code related to the Celligner manuscript☆46Updated 4 years ago
- scRNA-seq cell type identification☆43Updated 5 years ago
- ☆19Updated 2 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆34Updated 4 years ago
- Explore the cancer relevance of your gene list☆51Updated 4 months ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆43Updated 4 years ago
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Updated 2 years ago
- ☆14Updated 2 months ago
- Materials and scripts for building cell type encyclopedia table☆19Updated 5 months ago
- ☆35Updated 3 months ago
- A Snakemake pipeline for cellranger to process 10x single-cell RNAseq data☆16Updated 5 years ago