joan-smith / comprehensive-tcga-survivalLinks
Comprehensive survival analyses on the TCGA data.
☆18Updated 3 years ago
Alternatives and similar repositories for comprehensive-tcga-survival
Users that are interested in comprehensive-tcga-survival are comparing it to the libraries listed below
Sorting:
- Immunology-related bioinformatics data and tools☆75Updated last year
- Code related to the Celligner manuscript☆46Updated 5 years ago
- ☆67Updated 2 years ago
- ☆49Updated 3 years ago
- Bostongene cell deconvolution algorithm from RNAseq☆57Updated last year
- R package to access DoRothEA's regulons☆153Updated last year
- Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.☆84Updated 2 years ago
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆97Updated 4 years ago
- epigenome analysis to rank transcription factors☆31Updated 2 years ago
- Deep Learning based cell composition analysis with Scaden.☆83Updated last year
- ☆62Updated 5 years ago
- ☆44Updated last year
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆52Updated 7 years ago
- Transcriptomic tools to classify bladder tumours according to six published molecular classifications : Baylor, UNC, MDA, Lund, CIT-Curie…☆27Updated 2 years ago
- ACTIONet single-cell analysis framework☆43Updated last year
- Reproducibility repository accompanying Wilk, Rustagi, Zhao, et al. "A single-cell atlas of the peripheral immune response to severe COVI…☆49Updated 4 years ago
- R package for Pathway RespOnsive GENe activity inference☆111Updated 2 years ago
- R implementation of GLIPH (Grouping of Lymphocyte Interactions by Paratope Hotspots), an algorithm developed by Glanville et al to identi…☆25Updated 3 years ago
- The R Bioconductor package for scMAGeCK.☆13Updated last year
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆56Updated 2 years ago
- Tools used in Human Cell Landscape(HCL)☆56Updated 5 years ago
- A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.☆94Updated last year
- ☆31Updated 3 years ago
- Relative Expression Ordering Analysis (REOA) package☆21Updated 3 years ago
- ☆61Updated 4 years ago
- ☆18Updated 3 years ago
- Identifying tumor cells at the single-cell level using machine learning☆49Updated last year
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Updated 5 years ago
- Gene group activity utility functions for Scanpy☆95Updated 10 months ago
- epiTCR: a highly sensitive predictor for TCR–peptide binding☆13Updated 3 months ago