jyyulab / SJARACNeLinks
Scalable Tool for Gene Network Reverse Engineering
☆25Updated 2 months ago
Alternatives and similar repositories for SJARACNe
Users that are interested in SJARACNe are comparing it to the libraries listed below
Sorting:
- Dynamic models for single-cell RNA-seq time series.☆40Updated 7 years ago
- Fast motif matching in R☆46Updated last year
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Updated 5 years ago
- ☆43Updated 2 years ago
- ☆37Updated 10 months ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆44Updated 5 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆44Updated 4 months ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 4 years ago
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆24Updated 6 years ago
- Causal inference, differential expression, and co-expression for scRNA-seq☆19Updated 3 weeks ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- Single-cell Scalable Visualization and Analytics☆26Updated 6 years ago
- Epimap processing and analysis code repository☆33Updated 3 years ago
- Normalize CITEseq Data☆66Updated 2 months ago
- scNMT-seq gastrulation☆42Updated 2 years ago
- ☆43Updated 5 years ago
- Signac☆26Updated 2 years ago
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- A single-cell and spatial RNA-seq database for Alzheimer’s Disease☆26Updated last year
- metadata and data from the database☆41Updated 5 years ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆39Updated 7 years ago
- ☆55Updated 5 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- ☆28Updated 6 years ago
- R package with motifs for use with chromVAR☆28Updated 8 years ago
- ConsensusTME Gene Sets and R Script☆39Updated last year
- post-clustering differential expression test☆36Updated 6 years ago
- Hierarchical HotNet is an algorithm for finding hierarchies of active subnetworks.☆38Updated 6 years ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago
- An R-based interface for loom files☆67Updated 5 years ago