jyyulab / SJARACNe
Scalable Tool for Gene Network Reverse Engineering
☆23Updated 8 months ago
Alternatives and similar repositories for SJARACNe:
Users that are interested in SJARACNe are comparing it to the libraries listed below
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 3 years ago
- ☆34Updated 9 months ago
- ☆38Updated 4 years ago
- cancereffectsizeR: Estimate somatic mutation rates and quantify selection in cancer☆18Updated last week
- Single-cell Scalable Visualization and Analytics☆25Updated 5 years ago
- epigenome analysis to rank transcription factors☆30Updated 2 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 4 years ago
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆22Updated 5 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆39Updated 11 months ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated 2 years ago
- Fast motif matching in R☆45Updated last year
- GENIE3 (GEne Network Inference with Ensemble of trees) R-package☆30Updated 2 years ago
- ☆29Updated 6 years ago
- Explore the cancer relevance of your gene list☆49Updated 5 months ago
- ☆35Updated 11 months ago
- Linseed: LINear Subspace identification for gene Expresion Deconvolution☆29Updated 5 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- Access and Format Single-cell RNA-seq Datasets from Public Resources☆35Updated 2 months ago
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20Updated 6 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆35Updated 3 years ago
- ☆28Updated 6 years ago
- COMET Single-Cell Marker Detection tool☆31Updated 2 years ago
- ☆37Updated 3 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆44Updated last year
- Clone identification from single-cell data☆61Updated 2 years ago
- post-clustering differential expression test☆35Updated 5 years ago
- processes GoT amplicon data and generates a table of metrics☆28Updated 2 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆15Updated 3 years ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆38Updated 6 years ago
- Causal inference, differential expression, and co-expression for scRNA-seq☆18Updated 3 years ago