Coolgenome / TCMLinks
Codes used in pan-T cell analysis
☆59Updated 2 years ago
Alternatives and similar repositories for TCM
Users that are interested in TCM are comparing it to the libraries listed below
Sorting:
- R package for pathway analysis in scRNA-seq data☆73Updated 9 months ago
- ☆45Updated 3 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆104Updated last month
- ☆31Updated last year
- Single-cell multi-omics analysis reveals regulatory programs in clear cell renal cell carcinoma☆77Updated 7 months ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆82Updated last year
- Construct Tumor Transition Zone Microenvironment☆42Updated 6 months ago
- The integration of single cell rank-based gene set enrichment analysis☆122Updated 10 months ago
- ☆30Updated 2 years ago
- ☆42Updated 10 months ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated last month
- Data files and code for analysis of single-cell ccRCC data for the manuscript "Tumor-Specific Cell Populations in Clear Cell Renal Carcin…☆49Updated 3 years ago
- A R package for advanced single cell data viz☆67Updated last year
- ☆49Updated last year
- Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease☆93Updated 3 years ago
- ☆61Updated 5 years ago
- Codes for the scPLC project☆65Updated 2 years ago
- R package for Protein activity analysis of single-cell RNAseq.☆81Updated 2 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆65Updated 7 months ago
- Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…☆56Updated 2 years ago
- ☆52Updated 8 months ago
- Methods for decontamination of single cell data☆45Updated 3 months ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆70Updated 2 years ago
- ☆22Updated last year
- ☆34Updated last year
- Code repository for single cell RNA-seq☆35Updated 4 years ago
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆106Updated 2 months ago
- An R shiny based tool used for single cell RNA-seq data visualization and analysis.☆33Updated 4 years ago
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆112Updated 9 months ago
- This repository holds the scripts used to analyze the data presented in "A multi-omic single-cell landscape of human gynecologic malignan…☆45Updated last year