Coolgenome / TCM
Codes used in pan-T cell analysis
☆58Updated 2 years ago
Alternatives and similar repositories for TCM:
Users that are interested in TCM are comparing it to the libraries listed below
- R package for pathway analysis in scRNA-seq data☆73Updated 8 months ago
- ☆45Updated 3 years ago
- ☆29Updated last year
- ☆30Updated 2 years ago
- Construct Tumor Transition Zone Microenvironment☆42Updated 5 months ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated this week
- ☆41Updated 8 months ago
- Data files and code for analysis of single-cell ccRCC data for the manuscript "Tumor-Specific Cell Populations in Clear Cell Renal Carcin…☆46Updated 3 years ago
- Single-cell multi-omics analysis reveals regulatory programs in clear cell renal cell carcinoma☆77Updated 5 months ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆79Updated last year
- ☆60Updated 5 years ago
- Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…☆54Updated 2 years ago
- The integration of single cell rank-based gene set enrichment analysis☆122Updated 9 months ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆100Updated last year
- Codes for the scPLC project☆64Updated 2 years ago
- Mollecular Functional Portraits☆39Updated last year
- Coarse-graining of large single-cell RNA-seq data into metacells☆77Updated 7 months ago
- R package for Protein activity analysis of single-cell RNAseq.☆81Updated 2 years ago
- Methods for decontamination of single cell data☆40Updated 2 months ago
- ☆21Updated last year
- ☆46Updated last year
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆39Updated 3 years ago
- Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease☆93Updated 3 years ago
- ☆40Updated 2 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆36Updated 4 years ago
- R code used to analyze single cell PDAC data☆34Updated 9 months ago
- This repository holds the scripts used to analyze the data presented in "A multi-omic single-cell landscape of human gynecologic malignan…☆41Updated last year
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆44Updated 3 months ago
- An R shiny based tool used for single cell RNA-seq data visualization and analysis.☆33Updated 4 years ago
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆103Updated 7 months ago