cBioPortal / cgdsrLinks
R-Based API for accessing the MSKCC Cancer Genomics Data Server (CGDS)
☆25Updated 4 years ago
Alternatives and similar repositories for cgdsr
Users that are interested in cgdsr are comparing it to the libraries listed below
Sorting:
- Bioconductor2017 workshop - Analysis of single-cell RNA-seq data: Normalization, dimensionality reduction, clustering, and lineage infere…☆11Updated 8 years ago
- The official repository of the Bioconductor 2019 Conference Workshops☆24Updated 2 years ago
- An R Package for Geneset Enrichment Workflows☆76Updated 2 months ago
- Glimma R package☆50Updated last year
- Integrating zingeR with ZINB-WaVE weights☆24Updated 7 years ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated 2 years ago
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆41Updated 11 months ago
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆24Updated 6 years ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated 3 weeks ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 6 years ago
- An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser☆46Updated last year
- Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor☆25Updated last week
- GEO RNA-seq Experiments Processing Pipeline☆22Updated 6 years ago
- Software for preprocessing, filtering, alignment, and reporting of smallRNA-seq datasets☆23Updated 2 years ago
- Bioconductor package for management of multi-assay data☆73Updated 3 weeks ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆26Updated last month
- Software Package for Transcription Factor Binding Site (TFBS) Analysis☆31Updated 8 months ago
- Transcript quantification import with automatic metadata detection☆67Updated last week
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated last week
- R package for plotting 3D graphical visualization of multi-omics data.☆23Updated 3 years ago
- An R for fast and flexible DNA methylation analysis☆35Updated last week
- A R package for Grade of Membership model and Visualization of counts data:☆32Updated 4 years ago
- Identify and correct invalid gene symbols☆60Updated last year
- Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment☆33Updated last month
- DESeq2 or edgeR☆22Updated 9 years ago
- An R client for broads firehose pipeline, providing TCGA data sets☆61Updated 6 years ago
- Explore the cancer relevance of your gene list☆52Updated last week
- A General Framework for Consensus Partitioning☆63Updated 10 months ago
- Analysis examples based on the ISB-CGC hosted TCGA data, using R and R Markdown.☆31Updated 8 years ago
- Devel repository for minfi☆63Updated last year