R-Based API for accessing the MSKCC Cancer Genomics Data Server (CGDS)
☆25Dec 15, 2020Updated 5 years ago
Alternatives and similar repositories for cgdsr
Users that are interested in cgdsr are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Bioconductor2017 workshop - Analysis of single-cell RNA-seq data: Normalization, dimensionality reduction, clustering, and lineage infere…☆11Aug 4, 2017Updated 8 years ago
- ☆19Jun 11, 2025Updated 9 months ago
- A port of the matrixStats API to work with DelayedMatrix objects from the DelayedArray package☆15Apr 16, 2025Updated 11 months ago
- Interface to 10x Genomics' 1.3 m single cell data set☆18Aug 2, 2018Updated 7 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆21Feb 8, 2020Updated 6 years ago
- Introduction to the Bioconductor project☆19Oct 17, 2025Updated 5 months ago
- This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.☆11Jan 21, 2024Updated 2 years ago
- An R Interface to the ImmuneSpace database portal☆24Nov 28, 2023Updated 2 years ago
- An analysis of Arabidopsis RNA-seq data (hy5 mutant and wt, two replicates each; SRA accession SRX029582)☆16Jul 3, 2012Updated 13 years ago
- Update RCytoscape to work for Cytoscape 3.0 and higher using CyREST☆16Feb 3, 2018Updated 8 years ago
- Manage Files Across Sessions☆13Oct 30, 2025Updated 4 months ago
- Functional Annotation for Single-Cell Transcriptomics☆11Jun 29, 2024Updated last year
- TCGA Splicing Variation Database Cancer Splicing Variant Database Cancer alternative splicing database☆13Jun 9, 2025Updated 9 months ago
- ☆15Feb 20, 2025Updated last year
- Issues and pull requests for BiocStyle should go here.☆14Oct 30, 2025Updated 4 months ago
- Course material for introductory R / Bioconductor courses☆44Mar 15, 2023Updated 3 years ago
- stageR package☆13Feb 28, 2023Updated 3 years ago
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆41Dec 12, 2024Updated last year
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Oct 26, 2018Updated 7 years ago
- A straightforward bioinformatic pipeline for detecting a bacterial strain in one or more metagenome(s).☆19Jul 10, 2018Updated 7 years ago
- The Systems Biology Ontology (SBO) is a set of controlled, relational vocabularies of terms commonly used in Systems Biology, and in part…☆11May 16, 2023Updated 2 years ago
- Human transcription factor target genes from 6 databases in convenient R format.☆86Oct 4, 2018Updated 7 years ago
- Stable diffusion google colab kernel☆10Aug 17, 2022Updated 3 years ago
- Variant quality checking scripts.☆11Feb 4, 2016Updated 10 years ago
- Meteor+React+Antd tutorial step by step☆10Mar 2, 2017Updated 9 years ago
- A computational method for comparing cellular profiles with the flexibility to place a higher weight on functional features of interest.☆12Jan 31, 2023Updated 3 years ago
- Explore the cancer relevance of your gene list☆53Dec 17, 2025Updated 3 months ago
- Supplementary data for Petti, et al 2019 scRNA mutation publication☆16Feb 1, 2023Updated 3 years ago
- ☆12May 4, 2022Updated 3 years ago
- PAthway Representation and Analysis by Direct Inference on Graphical Models☆46Feb 7, 2018Updated 8 years ago
- Quantifiable predictive features define epitope-specific T cell receptor repertoires☆13Dec 8, 2022Updated 3 years ago
- anor: an annotation and visualization system based on R and Shiny framework☆33Apr 20, 2020Updated 5 years ago
- Course materials for the edX Data Analysis for Genomics☆36May 23, 2015Updated 10 years ago
- Slides for my RLadies NYC Presentation☆11Feb 27, 2020Updated 6 years ago
- This python package is for transitioning bioconductor from SVN to git☆14Mar 15, 2023Updated 3 years ago
- Tool for generating Python AWS Lambda zip files☆10Jul 8, 2019Updated 6 years ago
- A workshop on microbiome analysis using Bioconductor☆15Jun 20, 2019Updated 6 years ago
- BioData Club website and project management☆10Jul 28, 2021Updated 4 years ago
- Identifying recurrent mutations in cancer☆39Mar 4, 2021Updated 5 years ago