R-Based API for accessing the MSKCC Cancer Genomics Data Server (CGDS)
☆25Dec 15, 2020Updated 5 years ago
Alternatives and similar repositories for cgdsr
Users that are interested in cgdsr are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Bioconductor2017 workshop - Analysis of single-cell RNA-seq data: Normalization, dimensionality reduction, clustering, and lineage infere…☆11Aug 4, 2017Updated 8 years ago
- ☆19Jun 11, 2025Updated 10 months ago
- A port of the matrixStats API to work with DelayedMatrix objects from the DelayedArray package☆15Apr 16, 2025Updated 11 months ago
- Interface to 10x Genomics' 1.3 m single cell data set☆18Aug 2, 2018Updated 7 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆21Feb 8, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Introduction to the Bioconductor project☆19Oct 17, 2025Updated 5 months ago
- This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.☆11Jan 21, 2024Updated 2 years ago
- An R Interface to the ImmuneSpace database portal☆24Nov 28, 2023Updated 2 years ago
- An analysis of Arabidopsis RNA-seq data (hy5 mutant and wt, two replicates each; SRA accession SRX029582)☆16Jul 3, 2012Updated 13 years ago
- Update RCytoscape to work for Cytoscape 3.0 and higher using CyREST☆16Feb 3, 2018Updated 8 years ago
- Manage Files Across Sessions☆13Oct 30, 2025Updated 5 months ago
- [DEPRECATED] An R package to rapidly build and deploy supervised machine learning workflows☆16Jul 25, 2019Updated 6 years ago
- Functional Annotation for Single-Cell Transcriptomics☆12Jun 29, 2024Updated last year
- TCGA Splicing Variation Database Cancer Splicing Variant Database Cancer alternative splicing database☆13Jun 9, 2025Updated 10 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆16Feb 20, 2025Updated last year
- Issues and pull requests for BiocStyle should go here.☆14Oct 30, 2025Updated 5 months ago
- Course material for introductory R / Bioconductor courses☆44Mar 15, 2023Updated 3 years ago
- stageR package☆13Feb 28, 2023Updated 3 years ago
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆41Mar 31, 2026Updated 2 weeks ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Oct 26, 2018Updated 7 years ago
- A straightforward bioinformatic pipeline for detecting a bacterial strain in one or more metagenome(s).☆19Jul 10, 2018Updated 7 years ago
- Samtools' manual in Chinese - Samtools中文使用手册☆17Apr 20, 2016Updated 9 years ago
- The Systems Biology Ontology (SBO) is a set of controlled, relational vocabularies of terms commonly used in Systems Biology, and in part…☆11May 16, 2023Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Human transcription factor target genes from 6 databases in convenient R format.☆86Oct 4, 2018Updated 7 years ago
- Stable diffusion google colab kernel☆10Aug 17, 2022Updated 3 years ago
- Variant quality checking scripts.☆11Feb 4, 2016Updated 10 years ago
- A computational method for comparing cellular profiles with the flexibility to place a higher weight on functional features of interest.☆12Jan 31, 2023Updated 3 years ago
- Explore the cancer relevance of your gene list☆53Dec 17, 2025Updated 3 months ago
- Supplementary data for Petti, et al 2019 scRNA mutation publication☆16Feb 1, 2023Updated 3 years ago
- ☆12May 4, 2022Updated 3 years ago
- PAthway Representation and Analysis by Direct Inference on Graphical Models☆46Feb 7, 2018Updated 8 years ago
- Quantifiable predictive features define epitope-specific T cell receptor repertoires☆13Dec 8, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- anor: an annotation and visualization system based on R and Shiny framework☆33Apr 20, 2020Updated 5 years ago
- Course materials for the edX Data Analysis for Genomics☆36May 23, 2015Updated 10 years ago
- Slides for my RLadies NYC Presentation☆11Feb 27, 2020Updated 6 years ago
- This python package is for transitioning bioconductor from SVN to git☆14Mar 15, 2023Updated 3 years ago
- Lookup PubMed records and make Publication objects with info about a scientific publication☆41Nov 23, 2022Updated 3 years ago
- Tool for generating Python AWS Lambda zip files☆10Jul 8, 2019Updated 6 years ago
- A workshop on microbiome analysis using Bioconductor☆15Jun 20, 2019Updated 6 years ago