cBioPortal / cgdsrLinks
R-Based API for accessing the MSKCC Cancer Genomics Data Server (CGDS)
☆25Updated 4 years ago
Alternatives and similar repositories for cgdsr
Users that are interested in cgdsr are comparing it to the libraries listed below
Sorting:
- Bioconductor package for management of multi-assay data☆72Updated 2 months ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆43Updated this week
- Analysis examples based on the ISB-CGC hosted TCGA data, using R and R Markdown.☆31Updated 7 years ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 6 years ago
- Glimma R package☆50Updated last year
- An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser☆46Updated 11 months ago
- The official repository of the Bioconductor 2019 Conference Workshops☆24Updated 2 years ago
- An R Package for Geneset Enrichment Workflows☆76Updated last month
- Software for preprocessing, filtering, alignment, and reporting of smallRNA-seq datasets☆23Updated 2 years ago
- R package for plotting 3D graphical visualization of multi-omics data.☆23Updated 3 years ago
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆41Updated 10 months ago
- GEO RNA-seq Experiments Processing Pipeline☆21Updated 6 years ago
- Download, integration and visualizations of the variety & volume of TCGA data.☆51Updated 3 years ago
- Transcript quantification import with automatic metadata detection☆67Updated 2 weeks ago
- Reactome Pathway Analysis☆43Updated 6 months ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated 2 years ago
- Differential Count Data Analysis Toolbox☆61Updated last year
- Bioconductor2017 workshop - Analysis of single-cell RNA-seq data: Normalization, dimensionality reduction, clustering, and lineage infere…☆11Updated 8 years ago
- Sample code for ldsc analyses in UKBB☆31Updated 2 years ago
- An htmlwidget version of igv, for RStudio and Shiny apps☆38Updated last month
- iS-CellR: interactive graphical tool for analysis of single-cell RNAseq data☆24Updated 6 years ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆26Updated 2 weeks ago
- Functional enrichment analysis of high-throughput omics data☆20Updated 9 months ago
- Software Package for Transcription Factor Binding Site (TFBS) Analysis☆30Updated 7 months ago
- Bioconductor package that makes BIG data pint-sized.☆21Updated last year
- R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing☆61Updated 5 months ago
- Visualise correlation results and test significancies of these☆23Updated 5 years ago
- An R package for import, QC and analysis of Illumina Infinium genotyping arrays☆35Updated 7 years ago
- Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor☆25Updated this week
- DEAPP shiny App☆30Updated 3 years ago