Regulatory network inference and driver gene evaluation using integrative multi-omics analysis and penalized regression
☆17Jan 26, 2026Updated last month
Alternatives and similar repositories for AMARETTO
Users that are interested in AMARETTO are comparing it to the libraries listed below
Sorting:
- Analysis of Single Cell Expression, Normalization and Differential expression☆13Feb 29, 2020Updated 6 years ago
- Identification of differentially methylated genes in biomedical data☆15Jan 26, 2026Updated last month
- distinct: a method for differential analyses via hierarchical permutation tests☆11Dec 4, 2023Updated 2 years ago
- A pipeline for scRNA-seq data analysis☆15Mar 26, 2025Updated 11 months ago
- RNA editing quantification in deep transcriptome data☆16Jul 17, 2025Updated 7 months ago
- zero-inflated negative binomial gene expression in R☆20Jan 31, 2018Updated 8 years ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Sep 1, 2021Updated 4 years ago
- Materials and scripts for building cell type encyclopedia table☆20Dec 2, 2025Updated 3 months ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Oct 28, 2019Updated 6 years ago
- ☆21Feb 1, 2021Updated 5 years ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆21Jan 4, 2023Updated 3 years ago
- An analytics package for single cell data☆22May 18, 2022Updated 3 years ago
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆28May 15, 2024Updated last year
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆26Mar 3, 2020Updated 6 years ago
- BiocompR is a R package build upon ggplot2 to improve commonly used plots dedicated to data comparison, dataset exploration and, ultimate…☆18Jan 15, 2025Updated last year
- Academic Writing Analytics☆10Jan 5, 2026Updated 2 months ago
- Tools for doing x way meta-analysis☆12Apr 12, 2022Updated 3 years ago
- Epimap processing and analysis code repository☆34Aug 22, 2022Updated 3 years ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆76Feb 27, 2023Updated 3 years ago
- Codes for MICCAI 2021 Paper: Selective Learning from External Data for CT Image Segmentation☆12Oct 10, 2021Updated 4 years ago
- Workshop • Analysis of RNA-seq data☆37Mar 15, 2024Updated last year
- An unsupervised approach for the integrative analysis of single-cell multi-omics data☆30Nov 16, 2020Updated 5 years ago
- R toolbox for Archetypal Analysis and Pareto Task Inference on single cell data (based on ParTI)☆32Jul 27, 2020Updated 5 years ago
- The curatedOvarianData package provides data for gene expression analysis in patients with ovarian cancer☆11Oct 30, 2025Updated 4 months ago
- YouTubeライブの講義「みんなのデータサイエンス講座」、およびUdemyコース「みんなのデータサイエンス講座」で使用する教材です。☆13Oct 19, 2021Updated 4 years ago
- Project and coding tools for the Center for Innovative Design and Analysis (CIDA)☆10Nov 4, 2025Updated 4 months ago
- Submission for MICCAI HACKATHON: https://miccai-hackathon.com/#participate☆15Jul 19, 2023Updated 2 years ago
- Some sleuth walkthroughs to help you get started☆10Jul 26, 2018Updated 7 years ago
- Reproduce analyses in Harmony Manuscript☆11Feb 21, 2020Updated 6 years ago
- Introduction to Reproducible Publications with Quarto☆11Jan 28, 2025Updated last year
- Image-Processing-Node-Editor で動作するYouTube入力用ノード☆13Jul 12, 2025Updated 7 months ago
- LaTeX template of graduate Thesis [University of Chinese Academy of Sciences]☆12Nov 7, 2017Updated 8 years ago
- code for "Multi-modality contrastive learning for sarcopenia screening from hip X-rays and clinical information" in MICCAI 2023☆16Dec 3, 2025Updated 3 months ago
- ☆12Dec 23, 2025Updated 2 months ago
- [MICCAI 2023] Official implementation of our MICCAI 2023 paper "Pick the Best Pre-trained Model: Towards Transferability Estimation for M…☆13Jul 27, 2023Updated 2 years ago
- Crossmapped phenotype ontologies for the oncology domain☆13Feb 16, 2026Updated 2 weeks ago
- ☆12Apr 26, 2020Updated 5 years ago
- Software used by Trinity CTAT for building CTAT Genome Libs, resource databases shared by Trinity CTAT components☆10Apr 28, 2025Updated 10 months ago
- Factor Modeling for radiomics☆12Aug 29, 2025Updated 6 months ago