Alternatives and similar repositories for Topcuoglu_ML_mBio_2020:

Users that are interested in Topcuoglu_ML_mBio_2020 are comparing it to the libraries listed below

• raeslab / GMMs
  A manually curated database of human gut metabolic modules.
  ☆18Updated 6 years ago
• abodein / timeOmics
  Time-Course Multi-Omics data integration
  ☆24Updated 10 months ago
• schatzlab / scikit-ribo
  Accurate estimation and robust modelling of translation dynamics at codon resolution
  ☆20Updated 7 years ago
• PriceLab / ShannonMets
  ** Blood metabolome predicts gut microbiome α-diversity in humans**
  ☆24Updated 5 years ago
• NCBI-Hackathons / MetagenomicAntibioticResistance
  NastyBugs: a simple method for extracting antimicrobial resistance information from metagenomes
  ☆20Updated 6 years ago
• knights-lab / MLRepo
  ☆37Updated 3 years ago
• borenstein-lab / microbiome-metabolome-curated-data
  ☆61Updated 4 months ago
• danknights / mice8992-2016
  Code used in MiCE 8992 Spring 2016
  ☆43Updated 8 years ago
• Gibbons-Lab / mbtools
  R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.
  ☆23Updated last year
• jokergoo / KeywordsEnrichment
  ☆32Updated last year
• spholmes / F1000_workflow
  ☆43Updated 7 years ago
• sk-sahu / sig-bio-shiny
  A standalone interactive application for detecting biological significance on a set of genes
  ☆40Updated 3 years ago
• vallenderlab / MicrobiomeR
  A comprehensive and customizable R package for microbiome analysis.
  ☆21Updated 2 years ago
• mblstamps / stamps2022
  Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA
  ☆20Updated 2 years ago
• raeslab / omixer-rpm
  A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.
  ☆26Updated 6 years ago
• sschmeier / genomics
  Sphinx documentation source for a computational genomics tutorial.
  ☆33Updated 4 years ago
• lichen-lab / MDeep
  ☆14Updated 5 years ago
• blekhmanlab / host_gene_microbiome_interactions
  Analysis framework for integrating gut microbiome and host gene expression data
  ☆32Updated 2 years ago
• farhadm1990 / 16S-rRNA-amplicon
  Analysis of (gut) microbiome in Qiime2 and R.
  ☆17Updated 6 months ago
• Nick243 / Introduction-to-Metagenomics-Summer-Workshop-2019
  Data, scripts, and lectures for the Introduction to Metagenomics Summer Workshop 2019.
  ☆32Updated 5 years ago
• crazyhottommy / scripts-general-use
  ☆16Updated 7 years ago
• grimmlab / BookChapter-RNA-Seq-Analyses
  Best practice RNA-Seq analysis pipeline for reference-based RNA-Seq analysis
  ☆40Updated 3 years ago
• biobakery / melonnpan
  Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles
  ☆35Updated 11 months ago
• twbattaglia / MicrobeDS
  A repository for large-scale microbiome datasets, formatted for phyloseq
  ☆36Updated 10 months ago
• andreasmock / MetaboDiff
  ☆30Updated 4 years ago
• microbiome / mia
  Microbiome analysis
  ☆52Updated this week
• gavinmdouglas / picrust2_manuscript
  ☆21Updated 4 years ago
• SegataLab / metaml
  ☆28Updated 5 months ago
• shihuang047 / age-prediction
  ☆20Updated 4 years ago
• xiaolw95 / NetMoss
  ☆14Updated 2 years ago