SchlossLab / Topcuoglu_ML_mBio_2020Links
Best practices for applying machine learning to bacterial 16S rRNA gene sequencing data
☆31Updated 5 years ago
Alternatives and similar repositories for Topcuoglu_ML_mBio_2020
Users that are interested in Topcuoglu_ML_mBio_2020 are comparing it to the libraries listed below
Sorting:
- Analysis framework for integrating gut microbiome and host gene expression data☆34Updated 3 years ago
- Analysis of (gut) microbiome in Qiime2 and R.☆23Updated last year
- Time-Course Multi-Omics data integration☆26Updated last year
- Accurate estimation and robust modelling of translation dynamics at codon resolution☆22Updated 8 years ago
- ☆14Updated 3 years ago
- ☆33Updated 5 years ago
- A manually curated database of human gut metabolic modules.☆17Updated 7 years ago
- Cross-disease comparison of case-control gut microbiome studies☆69Updated 6 years ago
- ☆22Updated 5 years ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆24Updated last year
- Scripts for reproducing results shown in Gupta VK et al. "A Predictive Index for Health Status using Species-level Gut Microbiome Profili…☆36Updated 5 years ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆17Updated 6 months ago
- Sphinx documentation source for a computational genomics tutorial.☆36Updated 5 years ago
- ☆18Updated 3 years ago
- Scripts for stat and plot figures in rice microbiome paper☆30Updated last year
- A repository for large-scale microbiome datasets, formatted for phyloseq☆39Updated last year
- ☆24Updated 5 years ago
- Microbiome Projects from the Department of Genetics and Department of Gastroenterology and Hepatology , University Medical Centre Groning…☆59Updated 7 months ago
- Bioinformatics one-liner for 100 days☆49Updated last year
- Bioinformatics analysis scripts, workflows, general code examples☆54Updated 4 years ago
- pathway based data integration and visualization☆43Updated 9 months ago
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Updated 7 years ago
- An interactive web-tool for RNA-seq analysis☆70Updated last month
- ☆31Updated 2 years ago
- Gene Co-expression Network analysis pipeline☆25Updated 2 years ago
- A shiny package for microbiome functional enrichment analysis☆38Updated 3 weeks ago
- ☆25Updated 5 years ago
- ** Blood metabolome predicts gut microbiome α-diversity in humans**☆24Updated 6 years ago
- R shiny app for interactive microbiome analysis☆56Updated 7 months ago
- repository of the 2-day course "First steps with R in Life Sciences" from SIB-training☆53Updated 2 months ago