Alternatives and similar repositories for Topcuoglu_ML_mBio_2020

Users that are interested in Topcuoglu_ML_mBio_2020 are comparing it to the libraries listed below

• blekhmanlab / host_gene_microbiome_interactions
  Analysis framework for integrating gut microbiome and host gene expression data
  ☆33Updated 3 years ago
• raeslab / GMMs
  A manually curated database of human gut metabolic modules.
  ☆17Updated 7 years ago
• gavinmdouglas / picrust2_manuscript
  ☆24Updated 5 years ago
• cduvallet / microbiomeHD
  Cross-disease comparison of case-control gut microbiome studies
  ☆67Updated 6 years ago
• andreasmock / MetaboDiff
  ☆31Updated 5 years ago
• borenstein-lab / microbiome-metabolome-curated-data
  ☆74Updated last year
• twbattaglia / MicrobeDS
  A repository for large-scale microbiome datasets, formatted for phyloseq
  ☆39Updated last year
• Gibbons-Lab / mbtools
  R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.
  ☆23Updated last year
• YuLab-SMU / MicrobiomeProfiler
  A shiny package for microbiome functional enrichment analysis
  ☆36Updated 6 months ago
• SegataLab / metaml
  ☆34Updated last year
• drpowell / degust
  An interactive web-tool for RNA-seq analysis
  ☆69Updated 8 months ago
• schatzlab / scikit-ribo
  Accurate estimation and robust modelling of translation dynamics at codon resolution
  ☆20Updated 8 years ago
• xiaolw95 / NetMoss
  ☆14Updated 3 years ago
• FEI38750 / MTD
  MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data
  ☆16Updated 3 months ago
• farhadm1990 / 16S-rRNA-amplicon
  Analysis of (gut) microbiome in Qiime2 and R.
  ☆22Updated last year
• ACSoupir / Bioinformatics_YouTube
  The Github Page with some of the information pertaining to the YouTube videos.
  ☆12Updated 4 years ago
• abodein / timeOmics
  Time-Course Multi-Omics data integration
  ☆25Updated last year
• raeslab / omixer-rpm
  A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.
  ☆27Updated 6 years ago
• stevekm / Bioinformatics
  Bioinformatics analysis scripts, workflows, general code examples
  ☆54Updated 4 years ago
• wejlab / animalcules
  R shiny app for interactive microbiome analysis
  ☆56Updated 4 months ago
• cxli233 / customized_upset_plots
  Make customized upset plots: from raw data to plots
  ☆61Updated last month
• spholmes / F1000_workflow
  ☆43Updated 8 years ago
• gregpoore / tcga_rebuttal
  Re-analysis of data provided by Gihawi et al. 2023 bioRxiv
  ☆26Updated 2 years ago
• mblstamps / stamps2022
  Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA
  ☆22Updated 3 years ago
• knightlab-analyses / multiomic-cooccurrences
  ☆25Updated 5 years ago
• crazyhottommy / oneliner_100day_challenge
  Bioinformatics one-liner for 100 days
  ☆49Updated last year
• databio2022 / GraphBio
  GraphBio: a shiny web app to easily perform popular visualization analysis for omics data
  ☆33Updated 2 years ago
• sk-sahu / sig-bio-shiny
  A standalone interactive application for detecting biological significance on a set of genes
  ☆40Updated 4 years ago
• barreiro-r / fastqc-viz
  A modest re-desing update for the classic FastQC report.
  ☆28Updated last month
• Nick243 / Introduction-to-Metagenomics-Summer-Workshop-2019
  Data, scripts, and lectures for the Introduction to Metagenomics Summer Workshop 2019.
  ☆35Updated 6 years ago