Alternatives and similar repositories for Topcuoglu_ML_mBio_2020:

Users that are interested in Topcuoglu_ML_mBio_2020 are comparing it to the libraries listed below

• andreasmock / MetaboDiff
  ☆30Updated 4 years ago
• abodein / timeOmics
  Time-Course Multi-Omics data integration
  ☆24Updated 11 months ago
• raeslab / GMMs
  A manually curated database of human gut metabolic modules.
  ☆18Updated 6 years ago
• xiaolw95 / NetMoss
  ☆14Updated 2 years ago
• farhadm1990 / 16S-rRNA-amplicon
  Analysis of (gut) microbiome in Qiime2 and R.
  ☆18Updated 7 months ago
• ACSoupir / Bioinformatics_YouTube
  The Github Page with some of the information pertaining to the YouTube videos.
  ☆12Updated 4 years ago
• blekhmanlab / host_gene_microbiome_interactions
  Analysis framework for integrating gut microbiome and host gene expression data
  ☆32Updated 2 years ago
• sk-sahu / sig-bio-shiny
  A standalone interactive application for detecting biological significance on a set of genes
  ☆40Updated 3 years ago
• gavinmdouglas / picrust2_manuscript
  ☆23Updated 4 years ago
• dsurujon / ShinyOmics
  Exploration of Omics data
  ☆25Updated 4 years ago
• sib-swiss / RNAseq-introduction-training
  Webpage of the "Introduction to RNA-Seq: From quality control to pathway analysis - streamed" SIB course.
  ☆14Updated 6 months ago
• raeslab / omixer-rpm
  A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.
  ☆26Updated 6 years ago
• Gibbons-Lab / mbtools
  R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.
  ☆23Updated last year
• mblstamps / stamps2022
  Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA
  ☆20Updated 2 years ago
• YuLab-SMU / MicrobiomeProfiler
  A shiny package for microbiome functional enrichment analysis
  ☆38Updated 5 months ago
• jokergoo / KeywordsEnrichment
  ☆32Updated last year
• grimmlab / BookChapter-RNA-Seq-Analyses
  Best practice RNA-Seq analysis pipeline for reference-based RNA-Seq analysis
  ☆40Updated 3 years ago
• FEI38750 / MTD
  MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data
  ☆16Updated 10 months ago
• vallenderlab / MicrobiomeR
  A comprehensive and customizable R package for microbiome analysis.
  ☆23Updated 2 years ago
• PriceLab / ShannonMets
  ** Blood metabolome predicts gut microbiome α-diversity in humans**
  ☆24Updated 5 years ago
• EvaYiwenWang / Managing_batch_effects
  ☆13Updated last year
• knights-lab / MLRepo
  ☆37Updated 3 years ago
• NCBI-Hackathons / MetagenomicAntibioticResistance
  NastyBugs: a simple method for extracting antimicrobial resistance information from metagenomes
  ☆20Updated 6 years ago
• NBISweden / workshop-mlbiostatistics
  ☆16Updated this week
• borenstein-lab / microbiome-metabolome-curated-data
  ☆67Updated 5 months ago
• SegataLab / metaml
  ☆29Updated 6 months ago
• nf-core / dualrnaseq
  Analysis of Dual RNA-seq data - an experimental method for interrogating host-pathogen interactions through simultaneous RNA-seq.
  ☆21Updated this week
• spholmes / F1000_workflow
  ☆43Updated 7 years ago
• victoriapascal / gutsmash
  gutSMASH
  ☆53Updated 3 months ago
• crazyhottommy / scripts-general-use
  ☆16Updated 7 years ago