☆82Dec 4, 2023Updated 2 years ago
Alternatives and similar repositories for sourcetracker
Users that are interested in sourcetracker are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SourceTracker2☆92Jul 10, 2024Updated 2 years ago
- Fast expectation maximization for microbial source tracking☆152May 9, 2024Updated 2 years ago
- A Linear Discriminant Analysis Effect Size (LEfSe) wrapper.☆26Feb 2, 2017Updated 9 years ago
- ☆10Jun 9, 2020Updated 6 years ago
- Tools for visualising microbial community amplicon data☆74Nov 3, 2025Updated 11 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.☆467Feb 13, 2026Updated 8 months ago
- This is an R package for element cycle analysis using metagenomic data.☆50Feb 2, 2026Updated 9 months ago
- Sparse InversE Covariance estimation for Ecological Association and Statistical Inference☆234Aug 12, 2026Updated 2 months ago
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆55Aug 16, 2021Updated 5 years ago
- Generate de novo taxonomy of full length 16S rRNA sequences directly from environmental samples☆20Nov 23, 2024Updated last year
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Jul 3, 2021Updated 5 years ago
- accessory functions for processing microbial community data☆12Dec 24, 2022Updated 3 years ago
- Code, unit tests, and tutorials for running PICRUSt2☆399Oct 24, 2026Updated last week
- Ultra-efficient taxonomic mapping of NGS data☆51Mar 26, 2021Updated 5 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- SHallow shOtGUN profiler☆51Mar 4, 2022Updated 4 years ago
- Software to trim the ITS region of FASTQ sequences for amplicon sequencing analysis☆20Aug 17, 2026Updated 2 months ago
- A simple tool to calculate metrics from a BAM file and filter references with uneven coverages☆26Apr 24, 2026Updated 6 months ago
- ☆44Nov 20, 2017Updated 8 years ago
- compositional data analysis toolbox☆63Dec 15, 2022Updated 3 years ago
- Interpretation and visualization of microbiome charts☆552Jul 22, 2025Updated last year
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆175Sep 4, 2025Updated last year
- Handy tools for Microbiome analysis in R☆18May 22, 2019Updated 7 years ago
- A public resource for microbiome bioinformatics benchmarking using artificially constructed (i.e., mock) communities.☆84May 14, 2019Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- 🌈 Interactive analysis of metagenomics data☆456Sep 17, 2025Updated last year
- Temporal Development of the Gut Microbiome in Early Childhood - The TEDDY Study☆11Jul 13, 2018Updated 8 years ago
- Code for simulations and analysis for "Latent Variable Modeling for the Microbiome."☆21Dec 30, 2019Updated 6 years ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆481Oct 9, 2026Updated 3 weeks ago
- ☆19Jun 26, 2025Updated last year
- CCLasso: Correlation Inference for Compositional Data through Lasso☆17Jan 8, 2016Updated 10 years ago
- An R package for downstream data analysis of microbiome omics data☆295Oct 20, 2026Updated last week
- This is the source code for the "Analysis of Microbiome Community Data in R" ICPP 2018 workshop. The website is available at: https://gr…☆16Nov 30, 2023Updated 2 years ago
- ☆14Sep 26, 2019Updated 7 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Database of genomes integrated from the gut microbiome and other environments☆45Feb 3, 2023Updated 3 years ago
- De novo Extraction of Strains from MetAgeNomes☆72Jun 17, 2020Updated 6 years ago
- ☆42Jul 31, 2017Updated 9 years ago
- ☆14Jun 24, 2019Updated 7 years ago
- Phylogenetic and taxonomic analysis for genomes and metagenomes☆82Feb 17, 2016Updated 10 years ago
- A set of R scripts for the analysis of microbial profiles☆42Oct 6, 2026Updated 3 weeks ago
- Snakemake-based amplicon processing protocol for 16S and ITS sequences.☆13Mar 18, 2024Updated 2 years ago