Analysis of (gut) microbiome in Qiime2 and R.
☆25Aug 23, 2024Updated last year
Alternatives and similar repositories for 16S-rRNA-amplicon
Users that are interested in 16S-rRNA-amplicon are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Snakemake pipeline for 16S, 18S and ITS metagenomics using qiime2☆16Jan 20, 2024Updated 2 years ago
- A simple fastp-MultiQC nextflow pipeline☆12Feb 2, 2023Updated 3 years ago
- 16S rRNA marker gene upstream and dowstream analysis tutorial for the UCT Hex cluster.☆12Jan 15, 2021Updated 5 years ago
- My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq☆12Dec 19, 2022Updated 3 years ago
- Find similar photos with Python 🐍☆17Feb 1, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Cost-efficient genome-wide gene expression profiling☆16Dec 2, 2022Updated 3 years ago
- A Hierarchical Approach to Pangenomics Inference☆13Apr 15, 2024Updated 2 years ago
- ☆14Mar 8, 2021Updated 5 years ago
- Processing support for Greengenes2☆15Jul 31, 2023Updated 2 years ago
- Analysis tool for Nanopore sequencing data☆11Apr 26, 2024Updated 2 years ago
- A web application framework for analysis and visualization of High throughput Sequencing metagenomic data☆10Nov 21, 2016Updated 9 years ago
- Codes and sample data supporting the Dutch Microbiome Project. The preprint is currently available at https://www.biorxiv.org/content/10.…☆37Jun 24, 2021Updated 4 years ago
- ☆13Jan 6, 2021Updated 5 years ago
- All R codes for the guide "Doing Meta-Analysis in R"☆10Jun 20, 2019Updated 6 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Advanced steps of the OSCA book☆14Apr 27, 2026Updated last month
- digitalDLSorteR: An R package to deconvolute bulk RNA-Seq using scRNA-Seq data☆16Oct 31, 2024Updated last year
- Temporal Development of the Gut Microbiome in Early Childhood - The TEDDY Study☆10Jul 13, 2018Updated 7 years ago
- ☆15Sep 27, 2022Updated 3 years ago
- STAMPS 2018 course☆14Aug 8, 2018Updated 7 years ago
- ☆17Jun 17, 2021Updated 5 years ago
- SINCERITIES is a tool for inferring gene regulatory networks from time-stamped cross-sectional single cell transcriptional expression pro…☆15Oct 16, 2017Updated 8 years ago
- selbal: selection of balances for microbial signatures☆32Feb 24, 2025Updated last year
- Exploring microbial patterns through subtle nucleotide variation within 16S rRNA gene tag sequences of closely related taxa☆41Jun 24, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- The R code compares the performance metrics between logistic regression, SVM, Naive Bayes, Knn and random forest classifers in a 10 fold …☆15Mar 13, 2016Updated 10 years ago
- Best practices for applying machine learning to bacterial 16S rRNA gene sequencing data☆31Jun 10, 2020Updated 6 years ago
- A Snakefile to parallelize bwa.☆13Oct 25, 2013Updated 12 years ago
- A continually expanding collection of microbiome analysis tools☆19May 25, 2026Updated 3 weeks ago
- Count and compare 16S rRNA genes within a genus☆16Aug 1, 2024Updated last year
- Bioinformatics pipeline for nanopore sequencing data☆11Jan 4, 2019Updated 7 years ago
- User-friendly bulk RNAseq deconvolution using simulated annealing☆18Feb 8, 2024Updated 2 years ago
- ☆19Aug 29, 2025Updated 9 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆35Dec 4, 2025Updated 6 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- METAgenomic LONgitudinal Differential Abundance method☆16Dec 17, 2019Updated 6 years ago
- ☆43Nov 20, 2017Updated 8 years ago
- 16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Demo: https://ycl6.github.io/16S-Demo…☆40Jul 19, 2021Updated 4 years ago
- Repository for "Effective methods for bulk RNA-seq deconvolution using scRNA-seq and snRNA-seq derived transcriptomes"☆17Jul 9, 2023Updated 2 years ago
- ☆12Oct 17, 2017Updated 8 years ago
- Handy tools for Microbiome analysis in R☆18May 22, 2019Updated 7 years ago
- H3ABioNet 16S rDNA diverstity analysis package☆20May 20, 2019Updated 7 years ago