farhadm1990 / 16S-rRNA-amplicon
Analysis of (gut) microbiome in Qiime2 and R.
☆16Updated 2 months ago
Related projects ⓘ
Alternatives and complementary repositories for 16S-rRNA-amplicon
- ☆13Updated 3 years ago
- 16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Demo: https://ycl6.github.io/16S-Demo…☆33Updated 3 years ago
- Microbiome Projects from the Department of Genetics and Department of Gastroenterology and Hepatology , University Medical Centre Groning…☆52Updated 2 months ago
- ☆54Updated 8 months ago
- Code and analysis results for the CRC shotgun meta-analysis☆38Updated 2 years ago
- Repository of common bioinformatics scripts☆38Updated 3 years ago
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Updated 2 years ago
- Scripts for stat and plot figures in rice microbiome paper☆19Updated 5 years ago
- R implementation of the LEfSe method☆44Updated 2 weeks ago
- Scripts for stat and plot figures in rice microbiome paper☆30Updated last month
- Compare different differential abundance and expression methods☆50Updated 2 years ago
- Workshop • Intro to Bioinformatics using NGS data • 5 days☆13Updated this week
- Intro to Shell for Bioinformatics - with STG examples☆28Updated 8 years ago
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆109Updated 6 months ago
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆26Updated last year
- Accurate and rapid RiboRNA sequences Detector based on deep learning☆99Updated 10 months ago
- repository of the 2-day course "First steps with R in Life Sciences" from SIB-training☆42Updated 9 months ago
- Pipeline & Reproducible analysis examples for amplicon and metagenome in microbiome☆37Updated 4 years ago
- Course material for the metagenomics course☆43Updated 2 years ago
- ☆44Updated 4 years ago
- ☆16Updated last year
- Transcriptomics Visualization R package.☆58Updated 10 months ago
- Statistical analysis for sparse high-throughput sequencing☆67Updated 8 months ago
- Data, scripts, and lectures for the Introduction to Metagenomics Summer Workshop 2019.☆32Updated 5 years ago
- web documentation for Trinotate☆48Updated last year
- Analysis framework for integrating gut microbiome and host gene expression data☆31Updated 2 years ago
- Micro 612 genomics workshop☆36Updated 3 years ago
- Microbiome Protocol eBook related documents and scripts.☆44Updated 3 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated 2 months ago
- Metagenomics Workshop☆28Updated 7 years ago