PoisonAlien / TCGAmutationsLinks
R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE
☆98Updated last year
Alternatives and similar repositories for TCGAmutations
Users that are interested in TCGAmutations are comparing it to the libraries listed below
Sorting:
- Updated implementation of the GSEA-P R application for modern R distributions☆97Updated 3 years ago
- Integrative pathway enrichment analysis of multivariate omics data☆115Updated 3 months ago
- ☆87Updated last month
- An R interface to enrichR☆93Updated 8 months ago
- Simplify functional enrichment results☆118Updated last year
- GLASS consortium☆42Updated 5 years ago
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆92Updated 10 months ago
- R package for Pathway RespOnsive GENe activity inference☆109Updated 2 years ago
- Pipelines for the analysis of 10x single-cell RNA-sequencing data☆58Updated 2 years ago
- Immunology-related bioinformatics data and tools☆75Updated last year
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆97Updated 2 years ago
- Enrichment Networks for Pathway Enrichment Analysis☆60Updated 2 years ago
- ☆32Updated 3 years ago
- Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.☆84Updated 2 years ago
- ☆88Updated 4 years ago
- This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…☆73Updated 7 years ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆103Updated 2 years ago
- Tools for manipulating annotated data matrices☆92Updated 4 years ago
- ☆73Updated 2 years ago
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆124Updated 6 months ago
- chromatin Variability Across Regions (of the genome!)☆181Updated last year
- Scripts for paper entitled "Limits in the detection of m6A changes using MeRIP/m6A-seq☆51Updated 5 years ago
- Hypoxia associated molecular feature analysis☆35Updated 5 years ago
- Install GISTIC2 by one line code; GISTIC2 docker image☆41Updated 2 years ago
- Clone of the Bioconductor repository for the DropletUtils package.☆62Updated last month
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆56Updated 2 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆79Updated 7 months ago
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆51Updated 7 years ago
- The package wrapping the book, for deployment via the Bioconductor build system.☆91Updated 11 months ago
- ☆42Updated last year