An R package for accessing genomics data from UCSC Xena platform, from cancer multi-omics to single-cell RNA-seq https://cran.r-project.org/web/packages/UCSCXenaTools/
☆118May 5, 2026Updated 3 months ago
Alternatives and similar repositories for UCSCXenaTools
Users that are interested in UCSCXenaTools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- 📊 An R package for interactively exploring UCSC Xena https://xenabrowser.net/datapages/; Book: https://lishensuo.github.io/UCSCXenaShiny…☆103May 11, 2026Updated 3 months ago
- Standard regression functions in R enabled for parallel processing over large data-frames.☆38Sep 24, 2023Updated 2 years ago
- IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology. https://iobr.github.…☆293Jul 23, 2026Updated last month
- 🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R htt…☆163Dec 25, 2025Updated 8 months ago
- TCGAbiolinks☆354Oct 7, 2025Updated 10 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Genetic Heterogeneity Profiling by Single Cell RNA Sequencing☆36May 14, 2020Updated 6 years ago
- Multi-Omics integration and VIsualization in Cancer Subtyping☆149Jul 19, 2021Updated 5 years ago
- ☆30Jul 8, 2018Updated 8 years ago
- Seurat meets tidyverse. The best of both worlds.☆166Mar 3, 2026Updated 6 months ago
- Cell Annotation using Machine Learning-based method for the presence of Unknown cells (CAMLU)☆13May 19, 2025Updated last year
- Easily Process a Batch of Cox Models☆23Jul 26, 2025Updated last year
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆33Sep 16, 2021Updated 4 years ago
- Calculating Tumor microenvironment score☆29Jan 20, 2023Updated 3 years ago
- Integrating LASSO and bootstrapping algorithm to find best prognostic or predictive biomarkers☆21Oct 12, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Harvard FAS informatics scRNAseq workshop website☆40Aug 8, 2019Updated 7 years ago
- ☆17Jan 9, 2023Updated 3 years ago
- API for HOMER in R for Genomic Analysis using Tidy Conventions☆19Dec 1, 2021Updated 4 years ago
- Tools for manipulating annotated data matrices☆95Oct 13, 2021Updated 4 years ago
- Scissor package☆275May 10, 2024Updated 2 years ago
- Repository for signature genes from Immune Cell Atlas☆20Sep 25, 2019Updated 6 years ago
- Efficiently compute robust markers across single-cell datasets☆13Apr 21, 2021Updated 5 years ago
- XEnograft Visualization & Analysis☆11Oct 18, 2025Updated 10 months ago
- The integration of single cell rank-based gene set enrichment analysis☆157Jan 14, 2026Updated 7 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Assessing the purity of single cell population☆156Jun 3, 2022Updated 4 years ago
- Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.☆501Feb 25, 2026Updated 6 months ago
- Bioconductor components for general cancer genomics☆11Feb 5, 2023Updated 3 years ago
- Immune evasion before tumor invasion in early squamous lung cell carcinogenesis☆17Jul 19, 2021Updated 5 years ago
- Explore the cancer relevance of your gene list☆56Aug 11, 2026Updated 3 weeks ago
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆549Aug 3, 2026Updated last month
- R package for integrating and analyzing multiple single-cell datasets☆432Aug 18, 2026Updated 2 weeks ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆670Jun 5, 2026Updated 2 months ago
- Transcriptomic tools to classify bladder tumours according to six published molecular classifications : Baylor, UNC, MDA, Lund, CIT-Curie…☆29Dec 21, 2022Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆38Jul 8, 2020Updated 6 years ago
- Contribution of systemic and somatic factors to clinical response and resistance in urothelial cancer: an exploratory multi-omic analysis☆24Oct 31, 2017Updated 8 years ago
- plots function for array☆105Jun 13, 2024Updated 2 years ago
- Multi-subject Single Cell Deconvolution☆308Mar 4, 2024Updated 2 years ago
- Identifying cell subpopulational differences among single-cell biospecimens☆17Sep 27, 2024Updated last year
- Hypoxia associated molecular feature analysis☆36Nov 19, 2019Updated 6 years ago
- TOP results by CONfident efFECT Sizes.☆15Dec 9, 2024Updated last year