ropensci / UCSCXenaTools
An R package for accessing genomics data from UCSC Xena platform, from cancer multi-omics to single-cell RNA-seq https://cran.r-project.org/web/packages/UCSCXenaTools/
☆102Updated 3 weeks ago
Related projects: ⓘ
- Quantify and interpret divers of variation in multilevel gene expression experiments☆56Updated 3 months ago
- Tools for manipulating annotated data matrices☆84Updated 2 years ago
- 📊 An R package for interactively exploring UCSC Xena https://xenabrowser.net/datapages/; Book: https://lishensuo.github.io/UCSCXenaShiny…☆85Updated last week
- An R interface to enrichR☆76Updated 5 months ago
- scDataviz: single cell dataviz and downstream analyses☆60Updated 2 years ago
- DEP package☆26Updated last year
- ☆17Updated 2 years ago
- LDlinkR☆53Updated 5 months ago
- Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail☆75Updated this week
- Visualise correlation results and test significancies of these☆21Updated 4 years ago
- ☆14Updated 5 months ago
- Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCe…☆65Updated 3 months ago
- The package wrapping the book, for deployment via the Bioconductor build system.☆76Updated last year
- Statistical approach for removing unwanted variation from multiple single-cell datasets☆66Updated 5 months ago
- Interactive Cytometry Data Analysis☆60Updated 3 months ago
- MSigDB gene sets for multiple organisms in a tidy data format☆69Updated last year
- cytofkit: an integrated flow/mass cytometry data analysis pipeline☆57Updated 3 years ago
- 'Best Practices for Spatial Transcriptomics Analysis with Bioconductor' online book☆34Updated this week
- Brings SingleCellExperiment objects to the tidyverse☆35Updated this week
- Content for the OSCA Book.☆65Updated last year
- Devel repository for minfi☆58Updated 4 months ago
- Clone of the Bioconductor repository for the basilisk package.☆27Updated last month
- ☆27Updated 3 years ago
- Clone of the Bioconductor repository for the scater package.☆94Updated 2 months ago
- ☆24Updated 3 years ago
- NAguideR: performing and prioritizing missing value imputations for consistent bottom-up proteomic analyses☆42Updated 3 years ago
- Toolbox with R scripts☆37Updated 5 years ago
- Gene expression meta-analysis visualization tool☆17Updated last year
- R package for High dimensional data analysis and integration with O2PLS!☆31Updated 2 years ago
- Computational Suite for Bioinformaticians and Biologists (CSBB) is a RShiny application developed with an intention to empower researcher…☆34Updated last year