ropensci / UCSCXenaToolsLinks
An R package for accessing genomics data from UCSC Xena platform, from cancer multi-omics to single-cell RNA-seq https://cran.r-project.org/web/packages/UCSCXenaTools/
☆109Updated last week
Alternatives and similar repositories for UCSCXenaTools
Users that are interested in UCSCXenaTools are comparing it to the libraries listed below
Sorting:
- Tools for manipulating annotated data matrices☆92Updated 3 years ago
- 📊 An R package for interactively exploring UCSC Xena https://xenabrowser.net/datapages/; Book: https://lishensuo.github.io/UCSCXenaShiny…☆104Updated last week
- Quantify and interpret divers of variation in multilevel gene expression experiments☆66Updated 3 weeks ago
- Seurat meets tidyverse. The best of both worlds.☆159Updated this week
- scDataviz: single cell dataviz and downstream analyses☆63Updated 3 years ago
- A General Framework for Consensus Partitioning☆63Updated 7 months ago
- Interactive Cytometry Data Analysis☆67Updated this week
- Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCe…☆74Updated 2 months ago
- A Bioconductor package to retrieve and analyze data from the Human Protein Atlas☆38Updated 3 months ago
- Content for the OSCA Book.☆66Updated 2 years ago
- An online companion to the OSCA manuscript demonstrating Bioconductor resources and workflows for single-cell RNA-seq analysis.☆37Updated 2 years ago
- MSigDB gene sets for multiple organisms in a tidy data format☆82Updated last month
- Cancer Dependency Map package☆30Updated last year
- ☆20Updated 3 years ago
- Gene expression meta-analysis visualization tool☆22Updated 2 years ago
- plotthis is an R package that is built upon ggplot2 and other plotting packages.☆68Updated last week
- DEP package☆28Updated 2 years ago
- Brings SingleCellExperiment objects to the tidyverse☆36Updated 2 months ago
- Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail☆78Updated 4 months ago
- R wrappers to connect Python dimensional reduction tools and single cell data objects (Seurat, SingleCellExperiment, etc...)☆36Updated 8 months ago
- R package for High dimensional data analysis and integration with O2PLS!☆35Updated last month
- ☆27Updated 4 years ago
- Make Interactive Complex Heatmaps☆138Updated last year
- 🧠 Visualizing Single Cell and Spatial Transcriptomics☆50Updated 2 months ago
- Clone of the Bioconductor repository for the scater package.☆97Updated 6 months ago
- Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment☆22Updated 2 months ago
- This is a read-only mirror of the CRAN R package repository. WGCNA — Weighted Correlation Network Analysis☆54Updated 11 months ago
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆92Updated 8 months ago
- An r package that works as a wrapper to homologene☆46Updated last year
- Mixed-effect model to test differences in cell type proportions from single-cell data, in R☆111Updated 3 weeks ago