Assignment of known mutational signatures to individual samples and individual somatic mutations
☆79Jun 26, 2026Updated this week
Alternatives and similar repositories for SigProfilerAssignment
Users that are interested in SigProfilerAssignment are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations o…☆122May 26, 2026Updated last month
- SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the n…☆186Jun 18, 2026Updated last week
- SigProfilerSingleSample allows attributing a known set of mutational signatures to an individual sample. The tool identifies the activity…☆23Jan 17, 2025Updated last year
- SigProfilerPlotting provides a standard tool for displaying all types of mutational signatures as well as all types of mutational pattern…☆53Feb 8, 2026Updated 4 months ago
- Codes and Data for FFPEsig manuscript☆17Jan 17, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- An R wrapper for running the SigProfilerPlotting framework☆10Jan 29, 2026Updated 5 months ago
- MuSiCa - Mutational Signatures in Cancer☆23Dec 23, 2023Updated 2 years ago
- ABSOLUTE source code that works with allelic copy ratio on both hg19 and hg38☆16Nov 5, 2025Updated 7 months ago
- A comprehensive toolkit for mutational signature analysis☆42Jul 19, 2024Updated last year
- R wrapper for utilizing the SigProfilerMatrixGenerator framework☆20Jan 29, 2026Updated 5 months ago
- The EnsembleVariantCallingPipeline takes files in FASTQ or BAM format and performs SNV and INDEL variant calling from 4 variant callers (…☆15Jul 24, 2025Updated 11 months ago
- Python function for TMB snake plots☆16Feb 12, 2026Updated 4 months ago
- ☆13Sep 24, 2025Updated 9 months ago
- CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots☆99Aug 1, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- 🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R htt…☆162Dec 25, 2025Updated 6 months ago
- Mutational signature analysis for low statistics SNV data☆66Aug 7, 2024Updated last year
- Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…☆11Apr 7, 2026Updated 2 months ago
- Haplotype-based somatic genome simulator☆10Apr 20, 2026Updated 2 months ago
- R package containing useful functions for mutational signature analysis☆87Jun 22, 2026Updated last week
- A framework to infer mutational signatures in cancer over time☆58Jul 9, 2019Updated 6 years ago
- R package for extracting and visualizing mutational patterns in base substitution catalogues☆107Nov 22, 2022Updated 3 years ago
- ☆12Apr 18, 2022Updated 4 years ago
- ☆79Jul 12, 2023Updated 2 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- R package to organise and standardise your genomic variant calls obtained with different callers.☆11Jul 15, 2019Updated 6 years ago
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆24May 21, 2026Updated last month
- MutSig2CV from Lawrence et al. 2014☆33Aug 18, 2020Updated 5 years ago
- deconstructSigs☆144Apr 24, 2023Updated 3 years ago
- Conveniently perform ASCAT copy-number analysis from Tumor-Normal or Tumor only BAM files in R☆12Dec 6, 2021Updated 4 years ago
- Fast method for inferring cancer clonal population structure from SNV data.☆74Jan 20, 2026Updated 5 months ago
- mutSignatures R package - updated (dev) version - 2.1.4☆14Jan 18, 2023Updated 3 years ago
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆163Feb 12, 2026Updated 4 months ago
- Scripts used for the ACT paper☆12May 6, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Somatic copy variant caller (CNV) for next generation sequencing☆78Sep 12, 2024Updated last year
- ☆28Jun 14, 2026Updated 2 weeks ago
- ☆13Sep 18, 2017Updated 8 years ago
- Updated SignatureAnalyzer-GPU with mutational spectra & RNA expression compatibility.☆84Jan 20, 2026Updated 5 months ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆101Apr 20, 2021Updated 5 years ago
- Code used to generate the results in "Somatic chronology of treatment-resistant prostate cancer via deep whole-genome ctDNA sequencing"☆17Mar 11, 2024Updated 2 years ago
- ☆26Dec 18, 2024Updated last year