A comprehensive toolkit for mutational signature analysis
☆41Jul 19, 2024Updated last year
Alternatives and similar repositories for MuSiCal
Users that are interested in MuSiCal are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Optimizing Cancer Mutation Signatures Jointly with Sampling Likelihood☆10Aug 22, 2022Updated 3 years ago
- R package containing useful functions for mutational signature analysis☆86Mar 30, 2026Updated last week
- Companion repository for the human variant calling pipeline comparison paper☆12Feb 21, 2022Updated 4 years ago
- 🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R htt…☆159Dec 25, 2025Updated 3 months ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆42Apr 18, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Assignment of known mutational signatures to individual samples and individual somatic mutations☆76Feb 19, 2026Updated last month
- Explore the cancer relevance of your gene list☆53Dec 17, 2025Updated 3 months ago
- Interactive multiscale visualization for structural variation in human genomes☆72Apr 3, 2026Updated last week
- R package to organise and standardise your genomic variant calls obtained with different callers.☆11Jul 15, 2019Updated 6 years ago
- Method used in the study on germline mutation rate estimation in 68 species of vertebrates.☆16Oct 11, 2021Updated 4 years ago
- ☆12Apr 26, 2020Updated 5 years ago
- A framework to infer mutational signatures in cancer over time☆57Jul 9, 2019Updated 6 years ago
- gia: Genomic Interval Arithmetic☆66Aug 21, 2024Updated last year
- MSKCC Reis-Filho Lab pipeline thingy☆18Mar 31, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- deconstructSigs☆144Apr 24, 2023Updated 2 years ago
- SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)☆17Jul 28, 2025Updated 8 months ago
- Implementation of FACETS for Terra☆12Jan 20, 2023Updated 3 years ago
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆24Mar 26, 2026Updated 2 weeks ago
- A Framework to call Structural Variants from NGS based datasets☆22Jan 22, 2018Updated 8 years ago
- ☆18Aug 22, 2021Updated 4 years ago
- ☆11Apr 25, 2024Updated last year
- ☆18Jan 30, 2023Updated 3 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- DriverPower☆26Jan 18, 2025Updated last year
- ☆18Feb 25, 2022Updated 4 years ago
- Somatic coding and non-coding mutation enrichment analysis for tumor WGS data☆12Jun 16, 2021Updated 4 years ago
- Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (…☆14Jan 15, 2017Updated 9 years ago
- Calculates the Variant Allele Fraction of variants in VCF files☆19Nov 28, 2024Updated last year
- Analysis pipeline for cancer sequencing data☆112Apr 30, 2025Updated 11 months ago
- The SomaticSignatures package offers the framework for identifying mutational signatures of single nucleotide variants (SNVs) from high-t…☆23May 25, 2020Updated 5 years ago
- Cancer Predisposition Sequencing Reporter (CPSR)☆63Apr 1, 2026Updated last week
- Predicting oncogenic potential of gene fusions☆13Feb 13, 2016Updated 10 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Repository of the TRanslational ONCOlogy library, which includes various algorithms (such as CAPRESE and CAPRI) and the Pipeline for Canc…☆30Updated this week
- Mutational Signature Comprehensive Analysis Toolkit☆16Feb 19, 2026Updated last month
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆22May 21, 2024Updated last year
- Structural Variation breakpoint discovery via adaptive learning☆17Jul 6, 2023Updated 2 years ago
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Mar 6, 2024Updated 2 years ago
- Clonal structure identification through penalizing pairwise differences☆11Nov 25, 2025Updated 4 months ago
- Singular Genomics Demultiplexing Tool☆16Mar 5, 2024Updated 2 years ago