parklab / MuSiCalLinks
A comprehensive toolkit for mutational signature analysis
☆38Updated 11 months ago
Alternatives and similar repositories for MuSiCal
Users that are interested in MuSiCal are comparing it to the libraries listed below
Sorting:
- ☆22Updated 6 months ago
- IDR☆31Updated 2 years ago
- ☆28Updated 6 months ago
- RNA-seq workflow: differential transcript usage☆21Updated last year
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated last year
- mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data☆36Updated last week
- BISulfite-seq CUI Toolkit☆22Updated last month
- Version II of Mandalorion☆32Updated 6 years ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆59Updated 6 months ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated last year
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.☆57Updated 3 months ago
- Genomic Association Tester☆31Updated 2 years ago
- An R interface to the MEME Suite☆50Updated 2 weeks ago
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆33Updated 3 years ago
- BigWig and BAM utilities☆96Updated last year
- Python program designed to reconstruct immunoglobulin gene rearrangements and oncogenic translocations from WGS, WES and capture NGS in l…☆20Updated last year
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆61Updated 8 months ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆53Updated 3 weeks ago
- ☆13Updated 7 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 3 years ago
- Motif manipulation functions for R.☆29Updated 2 months ago
- FRASER - Find RAre Splicing Events in RNA-seq☆46Updated 3 weeks ago
- R package wrapping bedtools☆41Updated 3 months ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 3 months ago
- An R package for predicting HR deficiency from mutation contexts☆28Updated 4 months ago