parklab / MuSiCal
A comprehensive toolkit for mutational signature analysis
☆36Updated 9 months ago
Alternatives and similar repositories for MuSiCal:
Users that are interested in MuSiCal are comparing it to the libraries listed below
- ☆22Updated 4 months ago
- IDR☆31Updated 2 years ago
- SingleCell Nanopore sequencing data analysis☆57Updated 4 months ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆57Updated 4 months ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- ☆13Updated 7 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- ☆38Updated 5 years ago
- Version II of Mandalorion☆32Updated 6 years ago
- ☆28Updated 4 months ago
- Python program designed to reconstruct immunoglobulin gene rearrangements and oncogenic translocations from WGS, WES and capture NGS in l…☆20Updated last year
- mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data☆36Updated 2 weeks ago
- BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy …☆68Updated 4 months ago
- MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.☆56Updated last month
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated last year
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆30Updated last year
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆35Updated last year
- A Nextflow workflow for HLA typing using HLA-HD☆11Updated 9 months ago
- SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances☆85Updated 2 years ago
- ☆43Updated 2 years ago
- CLIP-seq Analysis of Multi-mapped reads☆30Updated 3 years ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆62Updated 6 months ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆59Updated 6 months ago
- An R package for predicting HR deficiency from mutation contexts☆28Updated 2 months ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 2 years ago
- snakemake workflow for post-processing scATACseq data☆20Updated 4 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆50Updated last week
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated last month
- FRASER - Find RAre Splicing Events in RNA-seq☆44Updated last month
- Long-read Isoform Quantification and Analysis☆39Updated last month