A comprehensive toolkit for mutational signature analysis
☆44Sep 14, 2026Updated last month
Alternatives and similar repositories for MuSiCal
Users that are interested in MuSiCal are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Companion repository for the human variant calling pipeline comparison paper☆12Feb 21, 2022Updated 4 years ago
- Optimizing Cancer Mutation Signatures Jointly with Sampling Likelihood☆10Aug 22, 2022Updated 4 years ago
- Assignment of known mutational signatures to individual samples and individual somatic mutations☆80Aug 26, 2026Updated 2 months ago
- Explore the cancer relevance of your gene list☆55Aug 11, 2026Updated 2 months ago
- ☆13Sep 24, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆12Apr 26, 2020Updated 6 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆44Apr 18, 2024Updated 2 years ago
- ☆18Feb 25, 2022Updated 4 years ago
- 🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R htt…☆163Oct 21, 2026Updated last week
- R package containing useful functions for mutational signature analysis☆90Updated this week
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆16Mar 6, 2024Updated 2 years ago
- SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations o…☆122Oct 18, 2026Updated last week
- Mutational Signature Comprehensive Analysis Toolkit☆16Sep 27, 2026Updated last month
- R package to organise and standardise your genomic variant calls obtained with different callers.☆11Jul 15, 2019Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Implementation of FACETS for Terra☆12Jan 20, 2023Updated 3 years ago
- MSKCC Reis-Filho Lab pipeline thingy☆18Sep 6, 2026Updated last month
- A framework to infer mutational signatures in cancer over time☆58Jul 9, 2019Updated 7 years ago
- Method used in the study on germline mutation rate estimation in 68 species of vertebrates.☆17Oct 11, 2021Updated 5 years ago
- Interactive multiscale visualization for structural variation in human genomes☆74Sep 22, 2026Updated last month
- gia: Genomic Interval Arithmetic☆69Aug 21, 2024Updated 2 years ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆21Jan 17, 2020Updated 6 years ago
- deconstructSigs☆144Apr 24, 2023Updated 3 years ago
- ☆11Jun 29, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Detects human contamination in bam files☆16Sep 10, 2020Updated 6 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Jan 22, 2018Updated 8 years ago
- ☆18Aug 22, 2021Updated 5 years ago
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆25Sep 28, 2026Updated last month
- Scripts to perform analysis in Agreement between two large pan-cancer CRISPR-Cas9 gene dependency datasets☆13Dec 5, 2019Updated 6 years ago
- DriverPower☆26Jan 18, 2025Updated last year
- CALDER (Cancer Analysis of Longitudinal Data through Evolutionary Reconstruction) reconstructs evolutionary trees from longitudinal bulk …☆15Nov 28, 2023Updated 2 years ago
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆151Sep 9, 2020Updated 6 years ago
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆53Apr 8, 2022Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆19Jan 30, 2023Updated 3 years ago
- SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the n…☆187Sep 29, 2026Updated last month
- Personalized prioritization of driver genes in cancer☆10Mar 14, 2022Updated 4 years ago
- ☆12Apr 25, 2024Updated 2 years ago
- Code used to generate the results in "Somatic chronology of treatment-resistant prostate cancer via deep whole-genome ctDNA sequencing"☆17Mar 11, 2024Updated 2 years ago
- analysis pipeline for CODEC data☆13Apr 22, 2026Updated 6 months ago
- Analysis pipeline for cancer sequencing data☆112Sep 28, 2026Updated last month