Classify chimeric reads based on unique kmer contents
☆14Aug 30, 2026Updated last month
Alternatives and similar repositories for klassify
Users that are interested in klassify are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Workflow to visualize pggb graphs in jbrowse☆11Mar 15, 2024Updated 2 years ago
- ☆21Dec 13, 2024Updated last year
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Jun 11, 2024Updated 2 years ago
- The tool is employed for the visualisation of genome-wide contact heatmaps.☆14Apr 14, 2025Updated last year
- A multiscale pangenome browser☆36Jul 18, 2026Updated 3 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Python wrapper for wavefront alignment using WFA2-lib☆39Updated this week
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated 2 years ago
- find likely coding segments in DNA using composition-normalised hexamer tables☆18Oct 18, 2024Updated 2 years ago
- lace up GFA files using panSN path name sub-ranges to coordinate the lacing☆14Jul 30, 2025Updated last year
- Inferring natural selection by comparative population genomic analysis across species☆28Oct 31, 2023Updated 2 years ago
- Variant Calling for the HPRC2☆19May 26, 2026Updated 4 months ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated last year
- A viewer for multiple alignment format (MAF) files in JBrowse 2☆14Aug 4, 2026Updated 2 months ago
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆40Dec 30, 2025Updated 9 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- GFA visualization tool - Rust reimplementation of odgi viz☆15May 2, 2026Updated 5 months ago
- plane sweep filtering genome alignments☆24Sep 28, 2026Updated 2 weeks ago
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated last year
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆28May 18, 2024Updated 2 years ago
- Rust binding for WFA2-lib☆10Jun 7, 2022Updated 4 years ago
- ☆13Dec 10, 2025Updated 10 months ago
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆38Apr 28, 2026Updated 5 months ago
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated last year
- Everything but the kitchen sink☆13Feb 6, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆33Jul 13, 2026Updated 3 months ago
- Robust Eukaryotic Annotation Toolkit☆17Feb 28, 2025Updated last year
- ☆16Oct 8, 2026Updated last week
- ☆17Updated this week
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆15Apr 28, 2026Updated 5 months ago
- Long-read aligner to pangenome graphs☆29May 20, 2024Updated 2 years ago
- Fully automatic k-mer based polishing for genome assemblies. Based on original concept and design from Ivan Sovic, Ann McCartney, and Ara…☆11Mar 16, 2026Updated 7 months ago
- COsine SImilarity-based Genotyper using pangenomes☆40Updated this week
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 11 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆30Oct 20, 2023Updated 2 years ago
- ☆13Nov 15, 2017Updated 8 years ago
- An accurate aligner of long reads to a variation graph, based on co-linear chaining☆35May 23, 2025Updated last year
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆32Jul 13, 2026Updated 3 months ago
- The complete sequence of a Chinese individual☆14Oct 8, 2024Updated 2 years ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Apr 25, 2025Updated last year
- The IntroBlocker ancestry inference algorithm☆18Oct 24, 2023Updated 2 years ago