Classify chimeric reads based on unique kmer contents
☆14Aug 30, 2026Updated 2 months ago
Alternatives and similar repositories for klassify
Users that are interested in klassify are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Workflow to visualize pggb graphs in jbrowse☆11Mar 15, 2024Updated 2 years ago
- ☆21Dec 13, 2024Updated last year
- genotype and visualize structural variants in the human pangenome graphs☆16Nov 21, 2025Updated 11 months ago
- Garfield: Genetic Association by Random Forest and InterpretivE Logic Decisions.☆11Jun 30, 2025Updated last year
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A multiscale pangenome browser☆36Jul 18, 2026Updated 3 months ago
- A context-based long-read simulator☆16Oct 12, 2026Updated 3 weeks ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Jun 11, 2024Updated 2 years ago
- find likely coding segments in DNA using composition-normalised hexamer tables☆18Oct 18, 2024Updated 2 years ago
- repository for materials to do with the VGP phase 1 data freeze, analyses, and publication☆11Dec 23, 2025Updated 10 months ago
- lace up GFA files using panSN path name sub-ranges to coordinate the lacing☆14Jul 30, 2025Updated last year
- Python wrapper for wavefront alignment using WFA2-lib☆40Oct 16, 2026Updated 3 weeks ago
- A viewer for multiple alignment format (MAF) files in JBrowse 2☆14Aug 4, 2026Updated 3 months ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆41Dec 30, 2025Updated 10 months ago
- A novel genome assembly pipeline based on deep learning☆71Dec 2, 2024Updated last year
- GFA visualization tool - Rust reimplementation of odgi viz☆15May 2, 2026Updated 6 months ago
- plane sweep filtering genome alignments☆24Sep 28, 2026Updated last month
- The tool is employed for the visualisation of genome-wide contact heatmaps.☆14Apr 14, 2025Updated last year
- Variant Calling for the HPRC2☆20May 26, 2026Updated 5 months ago
- Polyploid-aware, multiscale super-pangenome graph strategy☆20Oct 29, 2025Updated last year
- An experimental tool to estimate the similarity between all pairs of contigs☆41Apr 12, 2021Updated 5 years ago
- Rust binding for WFA2-lib☆10Jun 7, 2022Updated 4 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆38Apr 28, 2026Updated 6 months ago
- Inferring natural selection by comparative population genomic analysis across species☆28Oct 31, 2023Updated 3 years ago
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated last year
- Robust Eukaryotic Annotation Toolkit☆18Feb 28, 2025Updated last year
- ☆10Nov 20, 2025Updated 11 months ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆28May 18, 2024Updated 2 years ago
- Fully automatic k-mer based polishing for genome assemblies. Based on original concept and design from Ivan Sovic, Ann McCartney, and Ara…☆11Mar 16, 2026Updated 7 months ago
- Long-read aligner to pangenome graphs☆29May 20, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated last year
- ☆17Oct 12, 2026Updated 3 weeks ago
- A filter algorithm with program to filter an alignment or mapping file☆13May 15, 2025Updated last year
- ☆45Dec 11, 2025Updated 10 months ago
- ☆16Oct 8, 2026Updated 3 weeks ago
- ☆13Nov 15, 2017Updated 8 years ago
- A mass non-curated database of potential telomeric repeat sequences across the eukaryotic tree of life.☆13Oct 10, 2026Updated 3 weeks ago