☆37Nov 6, 2024Updated last year
Alternatives and similar repositories for lecture-notes-for-algorithms
Users that are interested in lecture-notes-for-algorithms are comparing it to the libraries listed below
Sorting:
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Jun 11, 2024Updated last year
- Fast, Cache-Efficient, and Scalable Queries on Pangenomes☆36Nov 7, 2025Updated 3 months ago
- Minimum Bait Cover Toolkit Syotti.☆13Jan 22, 2025Updated last year
- Toy files and training material to introduce Linux to molecular biologists☆22Jul 21, 2023Updated 2 years ago
- BItsliced Genomic Signature Index - Efficient indexing and search in very large collections of WGS data☆10Jun 13, 2023Updated 2 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Jul 24, 2025Updated 7 months ago
- ☆24Aug 25, 2025Updated 6 months ago
- C++ tools for NCBI taxonomy tasks☆12Jun 26, 2025Updated 8 months ago
- String algorithm visualizations☆13Feb 7, 2023Updated 3 years ago
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Jul 27, 2023Updated 2 years ago
- Accurate and rapid RiboRNA sequences Detector based on deep learning☆120Feb 5, 2026Updated 3 weeks ago
- Tool for exploring sequence alignment algorithms☆14Aug 30, 2024Updated last year
- Nanopore plasmid pipeline (FAST5 basecalling, assembly, plasmid identification and antimicrobial resistance genes identification).☆13Apr 20, 2021Updated 4 years ago
- Gapless, reference-quality Southern Han Chinese genome assembly and annotation☆12Oct 24, 2022Updated 3 years ago
- Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.☆13Nov 1, 2022Updated 3 years ago
- ☆12Nov 6, 2023Updated 2 years ago
- The python binding for D4 format☆16Oct 22, 2021Updated 4 years ago
- Robust individual and aggregate checksums for nucleotide sequences☆17Feb 8, 2026Updated 3 weeks ago
- BigWig and BAM utilities☆103Mar 26, 2024Updated last year
- Hierarchical Unique Bait Design for simultaneous and specific capture of known and novel targets☆17Sep 19, 2023Updated 2 years ago
- ☆14Oct 14, 2020Updated 5 years ago
- ANS_signature_scoring: A gene expression signature scoring Python package.☆17Jan 18, 2026Updated last month
- C implementation of the Landau-Vishkin algorithm☆35Apr 8, 2022Updated 3 years ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆18Oct 12, 2025Updated 4 months ago
- Interactive benchmarking of ranking and assignment methods☆16Dec 13, 2025Updated 2 months ago
- Ruby library for handling GFA files☆17Jul 10, 2025Updated 7 months ago
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Mar 6, 2024Updated last year
- Chimera: A Versatile Metagenomic Classification Tool☆20Feb 1, 2026Updated last month
- NCBI taxonomy tree in-memory mapping☆18Oct 20, 2022Updated 3 years ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆24Jan 6, 2026Updated last month
- A variable-selection oriented LASSO bagging algorithm for biomarker development in omic-based translational research☆19Jul 7, 2023Updated 2 years ago
- Teaching modules for Human Genome Variation Lab.☆20Jun 6, 2025Updated 8 months ago
- A Julia package for extracting mutation signatures using topic models☆19Feb 23, 2022Updated 4 years ago
- This is a read-only mirror of the CRAN R package repository. sequenza — Copy Number Estimation from Tumor Genome Sequencing Data. Homep…☆20May 9, 2019Updated 6 years ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆18Dec 13, 2024Updated last year
- barcode demultiplexing☆22Jun 4, 2019Updated 6 years ago
- BWA-MEME: Faster BWA-MEM2 using learned-index☆133Jul 1, 2024Updated last year
- FermiKit small variant calls for public SGDP samples☆17Sep 22, 2016Updated 9 years ago
- v2.x of the microassembly based somatic variant caller☆23Jul 16, 2025Updated 7 months ago