csoneson / iCOBRALinks
Interactive benchmarking of ranking and assignment methods
☆16Updated this week
Alternatives and similar repositories for iCOBRA
Users that are interested in iCOBRA are comparing it to the libraries listed below
Sorting:
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated last month
- Template for building a bioconductor workshop package using github actions☆21Updated 5 months ago
- Single Cell multimodal data scripts for downloading datasets☆17Updated last month
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆32Updated 2 months ago
- Machine learning use cases for teaching☆13Updated 8 years ago
- countsimQC - Compare characteristic features of count data sets☆29Updated last month
- Interactive Differential Expression AnaLysis - DE made accessible and reproducible☆31Updated 2 weeks ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 6 years ago
- Toolbox package for organizing and working with TCGA data☆28Updated this week
- Examples of kallisto + sleuth☆11Updated 8 years ago
- Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment☆33Updated last month
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆26Updated 2 months ago
- TOP results by CONfident efFECT Sizes.☆15Updated last year
- Repository for signature genes from Immune Cell Atlas☆18Updated 6 years ago
- Integrating zingeR with ZINB-WaVE weights☆24Updated 7 years ago
- An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser☆46Updated this week
- A Grammar of Data Manipulation for Omics Data☆21Updated 5 years ago
- Gene-level general linear mixed model☆23Updated 2 months ago
- ☆20Updated last month
- ☆10Updated 6 years ago
- Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRa…☆27Updated 3 weeks ago
- Toolkit for QTL mapping and meta-analysis.☆17Updated 3 years ago
- zero-inflated negative binomial gene expression in R☆20Updated 7 years ago
- A set of tools for accurate quantitation of single-cell allele-specific expression☆13Updated 2 years ago
- Interface to 10x Genomics' 1.3 m single cell data set☆18Updated 7 years ago
- The official repository of the Bioconductor 2019 Conference Workshops☆24Updated 2 years ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆18Updated 3 weeks ago
- Molecular Signatures Database (MSigDB) in a data frame☆16Updated 7 years ago
- Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…☆11Updated 2 months ago
- R package for benchmarking single cell analysis methods☆32Updated 2 years ago