csoneson / iCOBRALinks
Interactive benchmarking of ranking and assignment methods
☆16Updated 3 months ago
Alternatives and similar repositories for iCOBRA
Users that are interested in iCOBRA are comparing it to the libraries listed below
Sorting:
- Single Cell multimodal data scripts for downloading datasets☆17Updated this week
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆43Updated this week
- Repository for signature genes from Immune Cell Atlas☆18Updated 6 years ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 6 years ago
- R package for benchmarking single cell analysis methods☆32Updated 2 years ago
- Machine learning use cases for teaching☆13Updated 8 years ago
- A Grammar of Data Manipulation for Omics Data☆21Updated 5 years ago
- Template for building a bioconductor workshop package using github actions☆21Updated 4 months ago
- Integrating zingeR with ZINB-WaVE weights☆24Updated 7 years ago
- Interactive Differential Expression AnaLysis - DE made accessible and reproducible☆31Updated 5 months ago
- zero-inflated negative binomial gene expression in R☆20Updated 7 years ago
- Toolbox package for organizing and working with TCGA data☆28Updated 3 months ago
- Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRa…☆27Updated 6 months ago
- R package providing Variance Stabilizing Transformations appropriate for RNA-Seq data☆21Updated 5 months ago
- Gene-level general linear mixed model☆23Updated 3 weeks ago
- Interface to 10x Genomics' 1.3 m single cell data set☆18Updated 7 years ago
- ☆10Updated 7 years ago
- Assessing the increase in power from increasing read depth in a given RNA-Seq study☆13Updated 6 years ago
- ☆20Updated 3 months ago
- This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.☆10Updated last year
- ☆10Updated 6 years ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆18Updated 2 years ago
- integrative pathway analysis with modern PCA methodology and gene selection☆11Updated 2 years ago
- TOP results by CONfident efFECT Sizes.☆14Updated 10 months ago
- A set of tools for accurate quantitation of single-cell allele-specific expression☆13Updated 2 years ago
- Seamless navigation through combined results of set-based and network-based enrichment analysis☆21Updated last month
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆26Updated 2 weeks ago
- Bioconductor2017 workshop - Analysis of single-cell RNA-seq data: Normalization, dimensionality reduction, clustering, and lineage infere…☆11Updated 8 years ago
- Molecular Signatures Database (MSigDB) in a data frame☆16Updated 6 years ago
- Examples of kallisto + sleuth☆11Updated 8 years ago