telatin / learn_bashLinks
Toy files and training material to introduce Linux to molecular biologists
☆22Updated 2 years ago
Alternatives and similar repositories for learn_bash
Users that are interested in learn_bash are comparing it to the libraries listed below
Sorting:
- RNA-seq analysis scripts☆15Updated 2 months ago
- RNAseq analysis with Hisat2, stringtie, and ballgown☆17Updated 6 years ago
- ☆16Updated 2 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 9 months ago
- BrumiR: A toolkit for de novo discovery of microRNAs from sRNA-seq data.☆12Updated 3 years ago
- Long read to rMATS☆32Updated 2 years ago
- A command line tool to compute mapping statistics from a BAM file☆25Updated 3 years ago
- End-guided RNA assembler☆15Updated last month
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆15Updated 6 years ago
- ☆23Updated 5 months ago
- ☆21Updated last year
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆21Updated 3 weeks ago
- Two pass alignment for long reads☆22Updated 4 years ago
- PyRice is an API to access some Rice public databases at the same time with consistent output. PyRice design is modular and implements a …☆12Updated last year
- ☆17Updated last year
- ☆12Updated last year
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆20Updated 2 weeks ago
- ☆18Updated 4 years ago
- fastx-utils using klib☆20Updated 5 years ago
- Scripts used in the analysis of C elegans dRNAseq data☆14Updated last year
- ☆17Updated 6 months ago
- easy_sbatch - Batch submitting Slurm jobs with script templates☆16Updated 4 years ago
- FunctionaL Omics Processing platform☆13Updated last year
- Teaching modules for Human Genome Variation Lab.☆20Updated 7 months ago
- ☆15Updated 7 years ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated last year
- A software suite for accurate identification, annotation, translation, and feature characterization of annotate transcripts.☆22Updated 4 years ago
- A set of tools to annotate VCF files with expression and readcount data☆30Updated 10 months ago
- mgikit is a collection of tools used to demultiplex fastq files and generate demultiplexing and quality reports.☆17Updated last month
- Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".☆17Updated 2 years ago