toolkit to process gtf files
☆17Dec 24, 2021Updated 4 years ago
Alternatives and similar repositories for rnaseqtools
Users that are interested in rnaseqtools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Scallop is a reference-based transcriptome assembler for RNA-seq☆94Apr 30, 2021Updated 5 years ago
- Plot allele frequencies in VCF files☆11Apr 13, 2026Updated 2 months ago
- A tool for projecting genomic alignments to transcriptomic coordinates☆37May 28, 2024Updated 2 years ago
- ☆11Sep 28, 2021Updated 4 years ago
- GenomeTools: Scripts and Classes for Working with Genomic Data☆12Jun 7, 2018Updated 8 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A graph-based pipeline used to call/genotype snvs/indels/SVs from NGS data☆17Aug 30, 2025Updated 9 months ago
- This is a basic repository with all the scripts necessary to reconstruct the data analysis from our work on the 200 Genomes☆12Aug 31, 2018Updated 7 years ago
- Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.☆40Jul 15, 2019Updated 6 years ago
- genome annotation (RNAseq and TE) pipeline (draft)☆13Apr 20, 2026Updated last month
- Visualization toolkit for differential splicing events☆17Apr 19, 2026Updated last month
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 3 years ago
- Python port of cMonkey, a machine-learning based method for clustering☆26Apr 15, 2024Updated 2 years ago
- CONNET: Accurate Genome Consensus in Assembling Nanopore Sequencing Data via Deep Learning☆11Oct 28, 2022Updated 3 years ago
- ☆18Apr 18, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated 2 years ago
- Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files, rename fasta files (prefix a…☆23Oct 21, 2025Updated 7 months ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆79Aug 30, 2016Updated 9 years ago
- Predict the boundary of transcript start and end from RNA-seq reads alignment☆11Feb 13, 2017Updated 9 years ago
- ☆10Feb 25, 2024Updated 2 years ago
- General Use Scripts and Helper functions☆16Mar 29, 2018Updated 8 years ago
- cgat-apps repository☆36Apr 9, 2025Updated last year
- A collection of scripts to run GWAS, regional, gene-oriented, or per-variant analyses.☆18Jan 21, 2026Updated 4 months ago
- Repository☆10Oct 23, 2024Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Scripts used to perform analyses in Rice et al. (2023)☆16Dec 28, 2023Updated 2 years ago
- ☆16Aug 3, 2018Updated 7 years ago
- ☆10Mar 4, 2025Updated last year
- This is something I have decided to do to make something good come out of the current covid situation. Here I will put the publicly avail…☆12Sep 6, 2021Updated 4 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Jun 16, 2024Updated 2 years ago
- An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictog…☆13Feb 26, 2026Updated 3 months ago
- A series of scripts to automate sequence workflows☆19Apr 7, 2026Updated 2 months ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆26Nov 17, 2022Updated 3 years ago
- Gene Prediction using MAKER, CEGMA, SNAP, GENEMARK & AUGUSTUS☆10Jul 20, 2017Updated 8 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A software suite for accurate identification, annotation, translation, and feature characterization of annotate transcripts.☆23Sep 1, 2021Updated 4 years ago
- My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq☆12Dec 19, 2022Updated 3 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆43Apr 7, 2022Updated 4 years ago
- PhenomeXcan: mapping the genome to the phenome through the transcriptome☆11Jun 28, 2020Updated 5 years ago
- Westlake BioBank for Chinese pilot project☆10May 17, 2023Updated 3 years ago
- Notes by Markdown in HZAU Bioinformatics Courses☆13Dec 16, 2025Updated 6 months ago
- ☆10May 17, 2022Updated 4 years ago