Kingsford-Group / rnaseqtoolsView external linksLinks
toolkit to process gtf files
☆17Dec 24, 2021Updated 4 years ago
Alternatives and similar repositories for rnaseqtools
Users that are interested in rnaseqtools are comparing it to the libraries listed below
Sorting:
- Plot allele frequencies in VCF files☆11Jun 4, 2019Updated 6 years ago
- ☆11Sep 28, 2021Updated 4 years ago
- This is a basic repository with all the scripts necessary to reconstruct the data analysis from our work on the 200 Genomes☆12Aug 31, 2018Updated 7 years ago
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated last year
- ☆10Feb 25, 2024Updated last year
- GenomeTools: Scripts and Classes for Working with Genomic Data☆12Jun 7, 2018Updated 7 years ago
- Python port of cMonkey, a machine-learning based method for clustering☆26Apr 15, 2024Updated last year
- Visualization toolkit for differential splicing events☆17Nov 3, 2025Updated 3 months ago
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 2 years ago
- This is something I have decided to do to make something good come out of the current covid situation. Here I will put the publicly avail…☆12Sep 6, 2021Updated 4 years ago
- A graph-based pipeline used to call/genotype snvs/indels/SVs from NGS data☆17Aug 30, 2025Updated 5 months ago
- ☆18Apr 18, 2024Updated last year
- General Use Scripts and Helper functions☆16Mar 29, 2018Updated 7 years ago
- A collection of scripts to run GWAS, regional, gene-oriented, or per-variant analyses.☆18Jan 21, 2026Updated 3 weeks ago
- Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files, rename fasta files (prefix a…☆22Oct 21, 2025Updated 3 months ago
- Scallop is a reference-based transcriptome assembler for RNA-seq☆92Apr 30, 2021Updated 4 years ago
- My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq☆12Dec 19, 2022Updated 3 years ago
- cgat-apps repository☆34Apr 9, 2025Updated 10 months ago
- ☆24Nov 9, 2017Updated 8 years ago
- bioinformatics learning☆13Oct 10, 2023Updated 2 years ago
- Repository☆10Oct 23, 2024Updated last year
- A series of scripts to automate sequence workflows☆19Jan 24, 2026Updated 3 weeks ago
- Westlake BioBank for Chinese pilot project☆10May 17, 2023Updated 2 years ago
- ☆10Dec 2, 2025Updated 2 months ago
- A collection of python and bash scripts for various bioinformatics-related tasks☆12Sep 19, 2024Updated last year
- genome annotation (RNAseq and TE) pipeline (draft)☆13Aug 26, 2025Updated 5 months ago
- An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictog…☆13Jan 2, 2026Updated last month
- Gene Prediction using MAKER, CEGMA, SNAP, GENEMARK & AUGUSTUS☆10Jul 20, 2017Updated 8 years ago
- ☆10Jan 30, 2020Updated 6 years ago
- A software suite for accurate identification, annotation, translation, and feature characterization of annotate transcripts.☆22Sep 1, 2021Updated 4 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆25Nov 17, 2022Updated 3 years ago
- Fine mapping of genes associated with Parkinson's Disease using a variety of methods☆11Mar 7, 2022Updated 3 years ago
- Pipeline for eukaryotic genome annotation based on external evidences☆13Feb 23, 2023Updated 2 years ago
- CONNET: Accurate Genome Consensus in Assembling Nanopore Sequencing Data via Deep Learning☆11Oct 28, 2022Updated 3 years ago
- A complete Snakemake pipeline for detecting allele specific expression in RNA-seq☆10Jul 10, 2021Updated 4 years ago
- ☆10Apr 13, 2022Updated 3 years ago
- Heritability Estimation with high Efficiency using LD and Summary Statistics☆13Feb 14, 2024Updated 2 years ago
- ☆13Sep 7, 2022Updated 3 years ago
- ggplot2-based Manhattan plot☆12Oct 18, 2022Updated 3 years ago