Shamir-Lab / PRODIGY
Personalized prioritization of driver genes in cancer
☆9Updated 3 years ago
Alternatives and similar repositories for PRODIGY:
Users that are interested in PRODIGY are comparing it to the libraries listed below
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆13Updated 3 years ago
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆18Updated 3 months ago
- Inferring selection in cancer sequencing data using ABC and population based simulations☆11Updated 4 years ago
- ☆12Updated 11 months ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆16Updated last year
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- Testing a neutral evolution model on cancer sequencing data☆10Updated 4 years ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated 2 years ago
- CNAqc - Copy Number Alteration (CNA) Quality Check package☆20Updated last month
- ☆10Updated 4 years ago
- Python function for TMB snake plots☆16Updated 4 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- CircRNA testing and ploting R package☆9Updated 4 years ago
- ☆10Updated 2 years ago
- Optimizing Cancer Mutation Signatures Jointly with Sampling Likelihood☆10Updated 2 years ago
- Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (…☆13Updated 8 years ago
- Mutational Signature Comprehensive Analysis Toolkit☆13Updated 2 months ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Sparse Partial correlation ON Gene Expression - an R package for fast and robust ceRNA network inference☆11Updated 8 months ago
- Filter and prioritize fusion calls☆20Updated 6 months ago
- NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept …☆21Updated 4 years ago
- ASCETIC (Agony-baSed Cancer EvoluTion InferenCe) is a novel framework for the inference of a set of statistically significant temporal pa…☆11Updated 3 weeks ago
- R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework☆16Updated 3 months ago
- Machine learning use cases for teaching☆13Updated 7 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- R interface to megadepth: BigWig and BAM related utilities☆12Updated 4 months ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Updated last week
- Comprehensive Human Expressed SequenceS☆16Updated 8 months ago
- ☆17Updated 8 months ago
- Published at Bioinformatics☆12Updated 9 months ago