RabadanLab / PegasusLinks
Annotation and Prediction of Oncogenic Gene Fusions in RNAseq
☆11Updated 9 years ago
Alternatives and similar repositories for Pegasus
Users that are interested in Pegasus are comparing it to the libraries listed below
Sorting:
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆21Updated 8 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- cancereffectsizeR: Estimate somatic mutation rates and quantify selection in cancer☆18Updated 2 weeks ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 10 months ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆28Updated 2 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Updated 6 years ago
- hands-on for NGS/SNParray CNV call trainning☆17Updated 2 years ago
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆23Updated 6 years ago
- HOT regions paper☆11Updated 5 years ago
- A flexible framework to annotate and prioritize cancer somatic mutations.☆8Updated 8 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated last year
- DriverPower☆26Updated 4 months ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Filter and prioritize fusion calls☆20Updated 8 months ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- ☆20Updated 8 years ago
- GTEx analysis scripts☆20Updated 8 years ago
- A toolkit for working with ATAC-seq data.☆24Updated 11 months ago
- a parallel R package for detecting copy-number alterations from short sequencing reads☆23Updated 3 years ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago
- An integrated web-based resource for mapping functional networks of long or circular forms of non-coding RNAs☆10Updated 5 years ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆16Updated 3 years ago
- R package for Methylation-based Inference of Regulatory Activity☆13Updated 5 years ago
- Software Package for Transcription Factor Binding Site (TFBS) Analysis☆28Updated 2 months ago
- Filters for false-positive mutation calls in NGS☆30Updated 6 years ago