RabadanLab / PegasusLinks
Annotation and Prediction of Oncogenic Gene Fusions in RNAseq
☆12Updated 9 years ago
Alternatives and similar repositories for Pegasus
Users that are interested in Pegasus are comparing it to the libraries listed below
Sorting:
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆23Updated 9 years ago
- A framework to infer mutational signatures in cancer over time☆56Updated 6 years ago
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆24Updated 6 years ago
- ☆41Updated 7 years ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated last year
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 5 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆72Updated last year
- Tumour stratification by maximum-likelihood repeated evolution from multi-region sequencing data☆66Updated 2 years ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- DriverPower☆26Updated 10 months ago
- Utility functions for FACETS☆39Updated last month
- Bead-based single-cell atac processing☆33Updated 4 years ago
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines☆48Updated 8 months ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆31Updated last year
- R package for applying Gamma-Poisson regression to identify statistical enrichment or depletion of somatic mutations in regions after cor…☆31Updated last month
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- Pipeline for SpatialTranscriptomics and 10X Visium data☆21Updated 4 months ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆30Updated 8 months ago
- An R package for predicting HR deficiency from mutation contexts☆30Updated 9 months ago
- ☆20Updated 8 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 7 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 7 years ago
- EBI cancer workshop course materials☆22Updated 3 years ago
- Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests☆50Updated last year
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- Code accompanying The Evolutionary history of 2,658 cancers☆46Updated 4 years ago
- Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing.☆70Updated 4 years ago