RabadanLab / Pegasus
Annotation and Prediction of Oncogenic Gene Fusions in RNAseq
☆11Updated 9 years ago
Alternatives and similar repositories for Pegasus
Users that are interested in Pegasus are comparing it to the libraries listed below
Sorting:
- ☆20Updated 8 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- Filters for false-positive mutation calls in NGS☆30Updated 6 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- V'DJer - B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data☆29Updated 2 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆21Updated 8 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 9 months ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Convert RNA-STAR aligner "SJ.out.tab" files to "Percent spliced-in" (Psi) scores☆8Updated 9 years ago
- GTEx analysis scripts☆20Updated 8 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 6 years ago
- DriverPower☆26Updated 4 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- A toolkit for working with ATAC-seq data.☆24Updated 11 months ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- A flexible framework to annotate and prioritize cancer somatic mutations.☆8Updated 8 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 3 years ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated last year
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago
- An integrated web-based resource for mapping functional networks of long or circular forms of non-coding RNAs☆10Updated 5 years ago
- R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework☆16Updated 4 months ago
- ☆34Updated 5 years ago
- Published methods☆15Updated 8 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 8 years ago
- processes GoT amplicon data and generates a table of metrics☆29Updated 2 years ago
- ☆19Updated 7 years ago
- Toolkit for benchmarking fusion transcript predictions☆19Updated 8 months ago
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Updated 6 years ago