Illumina / tHapMixLinks
Haplotype-based somatic genome simulator
☆10Updated 8 years ago
Alternatives and similar repositories for tHapMix
Users that are interested in tHapMix are comparing it to the libraries listed below
Sorting:
- ☆11Updated 7 years ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Updated 7 years ago
- A small repo for storing the code for making the files and html for CCRs.☆22Updated 6 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated last month
- ☆13Updated 8 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated 2 years ago
- PopSTR - A Population based microsatellite genotyper☆33Updated 2 years ago
- extract SV signal from a BAM☆11Updated 7 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Updated last week
- MSKCC Reis-Filho Lab pipeline thingy☆18Updated 3 months ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Updated 9 years ago
- Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…☆21Updated 5 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- A comprehensive pipeline to analyze and visualize structural variants☆20Updated 5 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆18Updated 5 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Updated 6 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 5 years ago
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Updated last year
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 6 years ago
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Updated 7 years ago
- v2.x of the microassembly based somatic variant caller☆23Updated 5 months ago
- Multi-sample cancer phylogeny reconstruction☆36Updated 8 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 5 years ago
- ☆23Updated 3 weeks ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated 4 months ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Updated 6 years ago
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago