Illumina / tHapMixLinks
Haplotype-based somatic genome simulator
☆10Updated 8 years ago
Alternatives and similar repositories for tHapMix
Users that are interested in tHapMix are comparing it to the libraries listed below
Sorting:
- ☆11Updated 7 years ago
- A small repo for storing the code for making the files and html for CCRs.☆22Updated 5 years ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Updated 7 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 3 weeks ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- ☆13Updated 8 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Updated this week
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- MSKCC Reis-Filho Lab pipeline thingy☆17Updated 3 months ago
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- extract SV signal from a BAM☆11Updated 7 years ago
- PopSTR - A Population based microsatellite genotyper☆33Updated last year
- ☆21Updated last week
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 5 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Updated 6 years ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- A comprehensive pipeline to analyze and visualize structural variants☆20Updated 5 years ago
- Structural Variation breakpoint discovery via adaptive learning☆16Updated 2 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 4 years ago
- CAVA (Clinical Annotation of VAriants)☆14Updated 6 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 6 years ago
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Updated last year
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- v2.x of the microassembly based somatic variant caller☆23Updated last month
- Two pass alignment for long reads☆22Updated 4 years ago
- ☆29Updated 4 years ago
- sort genomic data☆36Updated 5 years ago