FJD-CEPH / aCNViewerLinks
Comprehensive genome-wide visualization of absolute copy number and copy neutral variations
☆29Updated 6 years ago
Alternatives and similar repositories for aCNViewer
Users that are interested in aCNViewer are comparing it to the libraries listed below
Sorting:
- An R package for predicting HR deficiency from mutation contexts☆29Updated 7 months ago
- ☆13Updated 8 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- ☆36Updated 6 years ago
- Irons out wrinkles in noisy coverage data using robust PCA☆15Updated 4 months ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- An R package to time somatic mutations☆64Updated 4 years ago
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆21Updated last year
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 6 months ago
- DNA copy number detection from off-target sequence data☆32Updated 7 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated 2 years ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆17Updated 5 years ago
- ☆21Updated 3 weeks ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆20Updated 5 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated 10 months ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆45Updated 3 years ago
- Utility functions for FACETS☆39Updated last year
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆27Updated 3 months ago
- ☆38Updated 4 years ago
- RNA editing tests☆17Updated 5 years ago
- DriverPower☆26Updated 8 months ago
- ☆17Updated 6 years ago
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆51Updated 3 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- MutSig2CV from Lawrence et al. 2014☆32Updated 5 years ago
- Code accompanying The Evolutionary history of 2,658 cancers☆46Updated 4 years ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆28Updated 2 years ago
- A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.☆41Updated last month
- GTEx analysis scripts☆20Updated 8 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆28Updated 3 years ago