FJD-CEPH / aCNViewerView external linksLinks
Comprehensive genome-wide visualization of absolute copy number and copy neutral variations
☆29Apr 10, 2019Updated 6 years ago
Alternatives and similar repositories for aCNViewer
Users that are interested in aCNViewer are comparing it to the libraries listed below
Sorting:
- Optimizing Cancer Mutation Signatures Jointly with Sampling Likelihood☆10Aug 22, 2022Updated 3 years ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆20Jan 17, 2020Updated 6 years ago
- Testing a neutral evolution model on cancer sequencing data☆10Feb 17, 2021Updated 4 years ago
- Inferring selection in cancer sequencing data using ABC and population based simulations☆11Jan 31, 2021Updated 5 years ago
- Concordance and contamination estimator for tumor–normal pairs☆59Oct 22, 2024Updated last year
- Implementation of FACETS for Terra☆12Jan 20, 2023Updated 3 years ago
- Easy Copy Number !☆21Aug 27, 2025Updated 5 months ago
- Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data☆21Aug 19, 2020Updated 5 years ago
- cDriver R package for finding candidate driver genes in cancers☆18Jan 18, 2018Updated 8 years ago
- CNV analysis workflow code for the manuscript☆13Jun 22, 2020Updated 5 years ago
- Code accompanying "The evolutionary history of 2,658 cancers", Nature 578, 122–128 (2020)☆17Jan 15, 2020Updated 6 years ago
- ☆22Feb 5, 2025Updated last year
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆71Nov 20, 2020Updated 5 years ago
- A Weighted Exact Test for Mutually Exclusive Mutations in Cancer☆21Sep 30, 2018Updated 7 years ago
- A framework to infer mutational signatures in cancer over time☆56Jul 9, 2019Updated 6 years ago
- ☆12Apr 26, 2020Updated 5 years ago
- The curatedOvarianData package provides data for gene expression analysis in patients with ovarian cancer☆11Oct 30, 2025Updated 3 months ago
- EBI cancer workshop course materials☆22May 9, 2022Updated 3 years ago
- Cancer Predisposition Sequencing Reporter (CPSR)☆63Oct 19, 2025Updated 3 months ago
- Battenberg R package for subclonal copynumber estimation☆95Dec 8, 2025Updated 2 months ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Sep 13, 2023Updated 2 years ago
- Nextflow pipeline for Mutect2 somatic variant calling best practices☆22Jun 14, 2024Updated last year
- ☆13Sep 24, 2025Updated 4 months ago
- R package to organise and standardise your genomic variant calls obtained with different callers.☆11Jul 15, 2019Updated 6 years ago
- Mutational Signature Comprehensive Analysis Toolkit☆15Aug 22, 2025Updated 5 months ago
- A python package for learning mutational signatures and their multidimensional genomic properties☆15Sep 1, 2020Updated 5 years ago
- SelectiOn in PRotein ANnotated regiOns. Adapted dN/dS based method to detect selection in specific protein regions☆11May 2, 2024Updated last year
- GLASS consortium☆14May 31, 2022Updated 3 years ago
- ☆12Nov 21, 2023Updated 2 years ago
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆149Sep 9, 2020Updated 5 years ago
- ☆75Jul 12, 2023Updated 2 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Aug 24, 2022Updated 3 years ago
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆158Jan 29, 2026Updated 2 weeks ago
- DriverPower☆26Jan 18, 2025Updated last year
- ☆11Apr 25, 2024Updated last year
- 📊Evaluating, filtering, comparing, and visualising VCF☆28Mar 9, 2023Updated 2 years ago
- Summary of a single or multiple MAF files.☆13Feb 5, 2025Updated last year
- Code used to generate the results in "Somatic chronology of treatment-resistant prostate cancer via deep whole-genome ctDNA sequencing"☆16Mar 11, 2024Updated last year
- A tool to detect tissue- and cancer- specific epigenetic signatures in WGS data of liquid biopsies☆10Mar 30, 2023Updated 2 years ago