SONGDONGYUAN1994 / PseudotimeDELinks
A robust DE test method that accounts for the uncertainty in pseudotime inference
☆37Updated 8 months ago
Alternatives and similar repositories for PseudotimeDE
Users that are interested in PseudotimeDE are comparing it to the libraries listed below
Sorting:
- ☆60Updated 2 months ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆90Updated 4 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆90Updated 5 months ago
- R package for specialised analysis of single cell data☆39Updated 3 years ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 5 months ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 3 years ago
- ☆43Updated 4 years ago
- Identify genes with spatial expression trends in single-cell gene expression data☆50Updated 7 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆56Updated 5 months ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- ☆44Updated 5 months ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated last year
- Normalize CITEseq Data☆66Updated last week
- SCDC☆45Updated 5 months ago
- Single-cell Case Control Analysis☆52Updated 3 weeks ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆57Updated 2 weeks ago
- Capybara: A computational tool to measure cell identity and fate transitions☆59Updated 3 years ago
- R package for single cell and other data analysis using diffusion maps☆91Updated last week
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆39Updated 4 years ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆45Updated 4 years ago
- BITFAM is a Bayesian approach and platform to infer transcription factor activities within individual cells using single cell RNA-sequenc…☆31Updated 6 months ago
- ☆41Updated 4 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆85Updated last year
- ☆50Updated 5 years ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆33Updated last year
- scWGCNA☆61Updated 3 years ago
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- Cell-cell communication and lineage inference for scRNA-seq data☆24Updated 2 years ago