SONGDONGYUAN1994 / PseudotimeDELinks
A robust DE test method that accounts for the uncertainty in pseudotime inference
☆36Updated 5 months ago
Alternatives and similar repositories for PseudotimeDE
Users that are interested in PseudotimeDE are comparing it to the libraries listed below
Sorting:
- ☆55Updated last year
- ☆41Updated 4 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆87Updated last month
- Capybara: A computational tool to measure cell identity and fate transitions☆59Updated 3 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- ☆50Updated 5 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆31Updated last year
- ☆41Updated last month
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆53Updated 2 months ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆41Updated 3 years ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆45Updated 4 years ago
- Single-cell Case Control Analysis☆51Updated 9 months ago
- scWGCNA☆61Updated 2 years ago
- analysis script for GBM single cell RNA seq data☆18Updated 4 years ago
- Normalize CITEseq Data☆66Updated 4 months ago
- Identify genes with spatial expression trends in single-cell gene expression data☆51Updated 7 years ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated last month
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated last month
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 9 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆85Updated 2 months ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆84Updated 11 months ago
- Updated scripts and pipelines for processing GESTALT data at single-cell resolution☆19Updated 4 years ago
- R package for specialised analysis of single cell data☆38Updated 2 years ago
- R package for robust clustering of single cell RNA sequencing data☆35Updated last year
- Cell-cell communication and lineage inference for scRNA-seq data☆24Updated 2 years ago
- ☆29Updated 2 years ago
- R package for Bioconductor submission☆35Updated 2 years ago
- R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem☆20Updated 3 months ago