Single-cell generalized trendmodel (scGTM): a flexible and interpretable model for gene expression along cell pseudotime. This is a Python package for modeling the statistical relationship between pseudotime and gene expression data.
☆12Sep 26, 2023Updated 3 years ago
Alternatives and similar repositories for scGTM
Users that are interested in scGTM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆15Jul 11, 2023Updated 3 years ago
- PRObabilistic Simulations of ScRNA-seq Tree-like Topologies☆29Jan 10, 2024Updated 2 years ago
- ☆16Apr 25, 2019Updated 7 years ago
- R package for the inference of cell fate bias from single-cell RNA-seq data.☆22Jun 14, 2022Updated 4 years ago
- A robust DE test method that accounts for the uncertainty in pseudotime inference☆40Mar 2, 2025Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Dynamical systems methods for RNA velocity analysis☆24May 19, 2021Updated 5 years ago
- Cell cycle inference in single-cell RNA-seq☆52Apr 25, 2023Updated 3 years ago
- ☆14Aug 13, 2023Updated 3 years ago
- A ggplot2 layer for drawing brackets annotated with p-values and significance testing between barplot samples.☆11May 25, 2017Updated 9 years ago
- R package that makes linux environment modules available from R☆11Jan 13, 2023Updated 3 years ago
- ☆29Dec 25, 2023Updated 2 years ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆24Jan 16, 2024Updated 2 years ago
- Time-Weighted Dynamic Time Warping☆11Dec 26, 2023Updated 2 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Sep 24, 2018Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- The code and analyses accompanying the manuscript “MetaMap: An atlas of metatranscriptomic reads in human disease-related RNA-seq data”.☆12Nov 28, 2018Updated 7 years ago
- Code for "Enhancing the Utility of Higher-Order Information in Relational Learning" (NeurIPS 2025))☆12Nov 2, 2025Updated 11 months ago
- Snakemake port of the original Galba pipeline☆13Updated this week
- Gene Ontology (GO) enrichment analysis☆12Aug 7, 2023Updated 3 years ago
- extension of the {chores} library, a ggplot2 assistant☆14Aug 3, 2025Updated last year
- scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics☆128Sep 29, 2025Updated last year
- Python package for integrating and analyzing multiple single-cell datasets (A Python version of LIGER)☆31May 16, 2025Updated last year
- Descriptive probabilistic marker gene approach to single-cell pseudotime inference☆30Nov 29, 2019Updated 6 years ago
- Publication Page for MPAL Paper 2019☆86Jun 25, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- An interpretable simulator that generates realistic single-cell gene expression count data with gene correlations recapitulated☆30Nov 2, 2024Updated last year
- ☆12Oct 18, 2024Updated 2 years ago
- Code and paper repository for the ICML paper "Learning population level diffusions with generative recurrent networks"☆11May 26, 2016Updated 10 years ago
- This R package provides simple connectors for querying neo4j graph databases.☆16Oct 10, 2026Updated 2 weeks ago
- Bindings to the HarfBuzz library for Text Shaping☆20Mar 18, 2026Updated 7 months ago
- Integrating temporal gene expression modalities for trajectory inference and disease prediction☆11Sep 20, 2022Updated 4 years ago
- A single cell sequencing read simulator.☆35Oct 14, 2024Updated 2 years ago
- Bam to Pandas DataFrame, quickly☆13May 10, 2025Updated last year
- Denoised Embedding Manifold Preservation☆12May 6, 2020Updated 6 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- A python library for markov chains used in Stochastic Processes course in NTUA☆12Apr 24, 2016Updated 10 years ago
- Package to design primers for MutaSeq and related methods☆11Jan 15, 2021Updated 5 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆41Jul 5, 2022Updated 4 years ago
- Just the leafviz parts of Leafcutter☆16Apr 2, 2026Updated 6 months ago
- This repository contains slides from some of the classes I have taught in my career. The repository will be updated from time to time. I…☆34Jul 23, 2026Updated 3 months ago
- Multiscale earth mover's distance methods for tree and manifold structured data☆13Mar 8, 2025Updated last year
- Multiple trajectory alignment of time-series data☆10Aug 23, 2023Updated 3 years ago