JSB-UCLA / scDesign2Links
An interpretable simulator that generates realistic single-cell gene expression count data with gene correlations recapitulated
☆27Updated last year
Alternatives and similar repositories for scDesign2
Users that are interested in scDesign2 are comparing it to the libraries listed below
Sorting:
- Quasilinear data representations for single-cell omics data analysis☆44Updated 2 years ago
- MultiMAP for integration of single cell multi-omics☆55Updated 2 years ago
- spatial transcriptome, single cell☆72Updated 2 years ago
- Non-parametric density inference for single-cell analysis.☆74Updated 6 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆67Updated last month
- ☆46Updated last year
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆56Updated 6 months ago
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆43Updated 2 months ago
- Python implementation of Milo for differential abundance testing on KNN graph☆77Updated 9 months ago
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆50Updated 10 months ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆115Updated last year
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated last year
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆66Updated 5 months ago
- Single-cell RNA-seq Gene Expression Recovery☆111Updated last year
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆56Updated last year
- Geometry-preserving random sampling☆95Updated last year
- ☆65Updated 2 years ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Updated 2 years ago
- ACTIONet single-cell analysis framework☆44Updated last year
- Single cell omics biology annotations☆50Updated 7 months ago
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆21Updated 4 years ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆81Updated 8 months ago
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆81Updated 3 years ago
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆47Updated 4 years ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 3 years ago
- Single-Cell Clustering Assessment Framework☆107Updated 2 years ago
- SPATA Package for spatial gene expression analysis☆21Updated 3 years ago
- Mapping the Functional Landscape of TCR Repertoire☆35Updated 4 years ago