JSB-UCLA / scDesign2Links
An interpretable simulator that generates realistic single-cell gene expression count data with gene correlations recapitulated
☆25Updated 9 months ago
Alternatives and similar repositories for scDesign2
Users that are interested in scDesign2 are comparing it to the libraries listed below
Sorting:
- Quasilinear data representations for single-cell omics data analysis☆42Updated 2 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆53Updated 2 months ago
- Single-cell RNA-seq Gene Expression Recovery☆111Updated 8 months ago
- MultiMAP for integration of single cell multi-omics☆56Updated last year
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆48Updated 6 months ago
- Capybara: A computational tool to measure cell identity and fate transitions☆59Updated 3 years ago
- ☆60Updated 2 years ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆63Updated last month
- A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…☆64Updated 2 weeks ago
- Non-parametric density inference for single-cell analysis.☆72Updated 2 months ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Updated 2 years ago
- Single-cell Hierarchical Poisson Factorization☆72Updated 3 years ago
- Geometry-preserving random sampling☆89Updated 9 months ago
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆43Updated 10 months ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- Python implementation of Milo for differential abundance testing on KNN graph☆74Updated 5 months ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆113Updated last year
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆63Updated last week
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- Benchmark of GRNs using the GRETA pipeline☆26Updated last week
- ACTIONet single-cell analysis framework☆42Updated 10 months ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated last year
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆21Updated 4 years ago
- ☆49Updated 7 years ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 3 years ago
- ☆46Updated last year
- ☆55Updated 7 years ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆36Updated last year
- ☆19Updated 5 years ago
- Single-Cell Clustering Assessment Framework☆105Updated last year