kris-nader / sp-typeLinks
scType goes spatial: ScType enables fast and accurate cell type identification from spatial transcriptomics data
☆9Updated 10 months ago
Alternatives and similar repositories for sp-type
Users that are interested in sp-type are comparing it to the libraries listed below
Sorting:
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆27Updated 10 months ago
- ☆28Updated 3 months ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆31Updated 3 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 6 months ago
- ☆15Updated 3 months ago
- analysis scripts related to Jin et al manuscript on scRNA seq in aging mouse brain☆17Updated 11 months ago
- Spatial One☆28Updated 7 months ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆35Updated last month
- ☆19Updated 2 months ago
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆18Updated 8 months ago
- CAST package☆40Updated 7 months ago
- cell type specific, trait-associated gene regulation☆26Updated 2 months ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆25Updated 3 months ago
- ☆22Updated 2 years ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆37Updated 6 months ago
- Trends in single cell papers☆14Updated 8 months ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆52Updated last month
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆33Updated 11 months ago
- Scripts used to perform the analyses to study the Biology of Myeloid Cells in Glioma Microenvironments☆17Updated 3 weeks ago
- ☆28Updated 3 months ago
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆11Updated 8 months ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 3 months ago
- RA Synovial Single-cell Multimodal Cell Atlas☆14Updated last year
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆35Updated 4 months ago
- iterative clustering pipeline of big single cell datasets.☆32Updated last month
- Spatial direct messaging detected by bivariate Moran☆26Updated last month
- Code for the spatial transcriptomic paper on IPF lungs☆17Updated 10 months ago
- ☆13Updated 3 years ago
- Collection of scripts for analysis of pan fetal immune atlas☆26Updated 2 years ago
- Spatial transcriptome analysis in python☆23Updated 4 months ago