bm2-lab / MUSICLinks
model-based understanding of single-cell CRISPR screening
☆25Updated 9 months ago
Alternatives and similar repositories for MUSIC
Users that are interested in MUSIC are comparing it to the libraries listed below
Sorting:
- PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data☆45Updated this week
- Tools for sgRNA calling in direct capture Perturb-seq data☆37Updated 2 years ago
- ☆30Updated 2 years ago
- Epimap processing and analysis code repository☆33Updated 3 years ago
- Unagi: Deep Generative Model for Deciphering Cellular Dynamics and In-Silico Drug Discovery in Complex Diseases.☆32Updated 2 months ago
- SClineager: a Bayesian hierarchical model that performs lineage tracing of single cells based on genetic markers☆10Updated last year
- This is the official repository for the Human Cell Atlas Heart project.☆29Updated 5 years ago
- Code related to the Celligner manuscript☆46Updated 4 years ago
- ☆18Updated 3 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆24Updated 11 months ago
- A toolkit for optimal workflow recommendation for proteomics data differential expression analysis☆17Updated 11 months ago
- ☆38Updated 2 months ago
- Splicing Neo Antigen Finder (SNAF) is an easy-to-use Python package to identify splicing-derived tumor neoantigens from RNA sequencing da…☆48Updated 7 months ago
- Reproducibility repository accompanying Wilk, Rustagi, Zhao, et al. "A single-cell atlas of the peripheral immune response to severe COVI…☆49Updated 3 years ago
- Molecular interactions inference from single-cell multi-omics data☆27Updated 2 weeks ago
- ☆51Updated last year
- ☆39Updated 4 years ago
- Inference of TCR motifs☆32Updated 3 months ago
- scWGCNA☆61Updated 2 years ago
- ☆17Updated last year
- SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…☆20Updated last year
- ☆35Updated 2 years ago
- Expedition suite for computing, visualizing, and analyzing single-cell alternative splicing data☆11Updated 8 years ago
- Fast motif matching in R☆46Updated last year
- Whole mouse brain snATAC seq analysis☆27Updated 4 months ago
- R package for the analysis of single-cell immune repertoires☆43Updated 7 months ago
- The scripts used for the analyses in TOME project☆25Updated 9 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆64Updated 2 months ago
- Mapping the Functional Landscape of TCR Repertoire☆34Updated 3 years ago
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆29Updated 5 months ago