model-based understanding of single-cell CRISPR screening
☆29Dec 13, 2024Updated last year
Alternatives and similar repositories for MUSIC
Users that are interested in MUSIC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Shareable project for: Decomposing Oncogenic Transcriptional Signatures to Generate Maps of Divergent Cellular States☆10Nov 11, 2020Updated 5 years ago
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆40Aug 31, 2026Updated last month
- ☆13Sep 8, 2020Updated 6 years ago
- Multi-slice Spatial Transcriptome Domain Analysis.☆12Dec 13, 2024Updated last year
- Toolbox package for organizing and working with TCGA data☆31Jul 2, 2026Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- rnalib: a python-based transcriptomics library☆14Jul 27, 2026Updated 2 months ago
- Analysis package for processing counts from genome-wide CRISPR/Cas9 screens☆16Feb 19, 2021Updated 5 years ago
- Updated scripts and pipelines for processing GESTALT data at single-cell resolution☆20May 22, 2021Updated 5 years ago
- A robust DE test method that accounts for the uncertainty in pseudotime inference☆40Mar 2, 2025Updated last year
- ☆12May 11, 2016Updated 10 years ago
- Metagenomic search for novel CRISPR-transposons☆12Sep 30, 2021Updated 5 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆15May 17, 2022Updated 4 years ago
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆99Jul 31, 2019Updated 7 years ago
- Pipeline for the generation and simulation of personalized Flux Balance Analysis models☆12Feb 14, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Image processing pipeline for spatial projects☆18Aug 3, 2023Updated 3 years ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Jan 24, 2023Updated 3 years ago
- ☆21May 24, 2025Updated last year
- Generalizable Cas9/sgRNA prediction models for multiple Cas9 variants☆11May 4, 2026Updated 5 months ago
- Data analysis scripts for Datlinger et. al, 2017 (doi:10.1038/nmeth.4177)☆35Feb 22, 2018Updated 8 years ago
- A causal implicit generative model for simulating single-cell RNA-seq data guided by a gene regulatory network 🧬☆40Jul 28, 2025Updated last year
- A flexible Julia toolkit for high-dimensional cellular profiles☆13Jul 14, 2023Updated 3 years ago
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆23May 11, 2018Updated 8 years ago
- Two or three subtypes of high grade serous ovarian cancer subtypes fit data from different populations better than four☆12Oct 10, 2018Updated 8 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆23Jul 7, 2016Updated 10 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆32Dec 3, 2024Updated last year
- INTERSTELLAR: Interpretation, scalable transformation, and emulation of large-scale sequencing reads☆17May 22, 2024Updated 2 years ago
- CRISPR NGS data analysis and visualization pipeline☆17Jul 26, 2019Updated 7 years ago
- HCC single cell analysis for Alvarez, Benhammou et al.☆20Apr 30, 2022Updated 4 years ago
- Single cell Morphology Quality Control (coSMicQC)☆11Oct 5, 2026Updated last week
- Genetic Heterogeneity Profiling by Single Cell RNA Sequencing☆36May 14, 2020Updated 6 years ago
- Pipeline to implement a "TAD_Pathways" analysis. Discover candidate genes based on association signals in TADs☆11Dec 21, 2019Updated 6 years ago
- RNA editing detection based on machine learning☆10Feb 7, 2018Updated 8 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Single-sequence protein-RNA complex structure prediction with biological language models☆18Sep 23, 2025Updated last year
- Material for the Berlin Bayesian reading group covering Statistical Rethinking by Richard McElreath☆10May 7, 2020Updated 6 years ago
- Scripts for the analysis of TT-seq and DRB/TT-seq data.☆12Mar 11, 2020Updated 6 years ago
- Cell segmentation☆22Jul 6, 2026Updated 3 months ago
- ☆10Aug 5, 2021Updated 5 years ago
- Image-based Profiling Handbook☆11Sep 18, 2026Updated 3 weeks ago
- ☆18Dec 18, 2024Updated last year