bm2-lab / MUSIC
model-based understanding of single-cell CRISPR screening
☆23Updated 7 months ago
Related projects ⓘ
Alternatives and complementary repositories for MUSIC
- Code and figures accompanying the paper, "Single-cell alternative splicing analysis with Expedition reveals splicing dynamics during neu…☆20Updated 7 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆42Updated last year
- ☆48Updated 4 months ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆49Updated last year
- mutation(barcode) caller for 10x single cell data☆44Updated 4 years ago
- ☆41Updated 3 months ago
- ☆29Updated 2 years ago
- scWGCNA☆55Updated 2 years ago
- Functional Inference of Gene Regulation☆37Updated 4 months ago
- Epimap processing and analysis code repository☆33Updated 2 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆33Updated 3 years ago
- ScoMAP is an R package to spatially integrate single-cell omics data into virtual cells and infer enhancer-to-gene relationships.☆25Updated 3 years ago
- ☆31Updated 5 years ago
- epigenome analysis to rank transcription factors☆30Updated last year
- Pathway Enrichment-Guided Activity Study of Alternative Splicing (PEGASAS)☆18Updated 2 years ago
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆43Updated 9 months ago
- ☆27Updated 3 months ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆23Updated 2 months ago
- A count based method for detecting doublets from single nucleus ATAC-seq (snATAC-seq) data.☆29Updated last year
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 3 years ago
- Reproducibility repository accompanying Wilk, Rustagi, Zhao, et al. "A single-cell atlas of the peripheral immune response to severe COVI…☆47Updated 3 years ago
- ☆46Updated last year
- ☆37Updated 3 years ago
- SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…☆18Updated 4 months ago
- Single Cell Analysis of Five'Ends☆45Updated 8 months ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆27Updated last year
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆38Updated 2 years ago
- ☆47Updated 4 years ago
- ☆34Updated 6 months ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago