wehos / CellTLinks
An offical repo for paper "Single-cells are Spatial Tokens: Transformers for Spatially Resolved Transcriptomics Data Imputation"
☆18Updated 2 years ago
Alternatives and similar repositories for CellT
Users that are interested in CellT are comparing it to the libraries listed below
Sorting:
- Identify spatial domain☆79Updated 2 months ago
- ☆127Updated last year
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆95Updated 5 months ago
- ☆41Updated last year
- conST: an interpretable multi-modal contrastive learning framework for spatial transcriptomics☆28Updated last year
- ☆60Updated 9 months ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆73Updated 3 years ago
- a unified single-cell data integration framework by optimal transport☆35Updated 10 months ago
- ☆39Updated last year
- Cell clustering for spatial transcriptomics data with graph neural network☆63Updated 2 years ago
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆69Updated last year
- ☆122Updated 3 years ago
- ☆59Updated last year
- A novel method named stDiff investigates the potential of employing diffusion models for single-cell omics generation.☆22Updated last year
- Single-cell biological network inference using a heterogeneous graph transformer☆73Updated 6 months ago
- SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph con…☆232Updated last year
- STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.☆44Updated last year
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆46Updated 2 years ago
- an SRT simulator for simulating multiple spatial variability in spatial resolved transcriptomics and generating unbiased simulated SRT da…☆25Updated 5 months ago
- Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.☆92Updated last year
- Multi-omics data analysis for rare population inference using single-cell graph transformer☆19Updated 9 months ago
- Spatial-Linked Alignment Tool☆87Updated 8 months ago
- SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.☆66Updated last year
- ☆14Updated 2 years ago
- Single-cell spatial elucidation through image-augmented graph transformer☆33Updated 2 years ago
- A Deep Learning-Based Model for the integration, cross-dataset cross-modality generation, self augmentation and matched multi-omics simul…☆15Updated 2 weeks ago
- overview of spatial datasets☆75Updated last year
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics (STAGATE software based on pyG framewo…☆57Updated last year
- scGNN (single cell graph neural networks) for single cell clustering and imputation using graph neural networks☆149Updated last year
- Single-Cell Multimodal Prediction via Transformer☆28Updated last year