wehos / CellT
An offical repo for paper "Single-cells are Spatial Tokens: Transformers for Spatially Resolved Transcriptomics Data Imputation"
☆17Updated last year
Alternatives and similar repositories for CellT:
Users that are interested in CellT are comparing it to the libraries listed below
- Identify spatial domain☆68Updated last year
- ☆53Updated 4 months ago
- ☆33Updated 9 months ago
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆84Updated 2 months ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆44Updated last year
- ☆10Updated last year
- conST: an interpretable multi-modal contrastive learning framework for spatial transcriptomics☆26Updated last year
- ☆109Updated last year
- an SRT simulator for simulating multiple spatial variability in spatial resolved transcriptomics and generating unbiased simulated SRT da…☆23Updated 2 weeks ago
- ☆55Updated 8 months ago
- a unified single-cell data integration framework by optimal transport☆35Updated 5 months ago
- STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.☆35Updated 11 months ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆70Updated 3 years ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics (STAGATE software based on pyG framewo…☆56Updated last year
- Cell clustering for spatial transcriptomics data with graph neural network☆59Updated last year
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆61Updated 10 months ago
- A novel method named stDiff investigates the potential of employing diffusion models for single-cell omics generation.☆18Updated last year
- ☆39Updated last year
- SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.☆51Updated 9 months ago
- Single-cell spatial elucidation through image-augmented graph transformer☆31Updated last year
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆35Updated this week
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆33Updated 8 months ago
- ☆29Updated last year
- domain adaptation of spatial and single-cell transcriptome☆26Updated 6 months ago
- overview of spatial datasets☆71Updated last year
- Spatial-Linked Alignment Tool☆84Updated 3 months ago
- Single-Cell Multimodal Prediction via Transformer☆26Updated last year
- Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.☆78Updated 11 months ago
- STAligner: Integrating spatial transcriptomics data across different conditions, technologies, and developmental stages☆21Updated last year
- scAce: an adaptive embedding and clustering method for scRNA-seq data☆11Updated last year