An offical repo for paper "Single-cells are Spatial Tokens: Transformers for Spatially Resolved Transcriptomics Data Imputation"
☆18Aug 11, 2023Updated 3 years ago
Alternatives and similar repositories for CellT
Users that are interested in CellT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics (STAGATE software based on pyG framewo…☆69Nov 10, 2023Updated 2 years ago
- ☆13Nov 3, 2023Updated 2 years ago
- conST: an interpretable multi-modal contrastive learning framework for spatial transcriptomics☆30Feb 16, 2024Updated 2 years ago
- Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.☆106Mar 28, 2024Updated 2 years ago
- Single-Cell Multimodal Prediction via Transformer☆28Feb 7, 2024Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- CONCERT predicts niche-aware perturbation responses in spatial transcriptomics☆24Nov 13, 2025Updated 9 months ago
- Reproducible analyses for the NicheCompass manuscript☆14Updated this week
- ☆16Jan 14, 2026Updated 7 months ago
- Single Cell Multi-omics deep clustering☆32Jul 1, 2025Updated last year
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆155Aug 21, 2026Updated last week
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆55Apr 28, 2023Updated 3 years ago
- Batch alignment of single-cell transcriptomics data using deep metric learning☆25Feb 5, 2024Updated 2 years ago
- A Transformer Model Exploiting Histology Images and Spatial Gene Expression☆22Mar 18, 2025Updated last year
- scGCN is a graph convolutional networks algorithm for knowledge transfer in single cell omics☆40Aug 11, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Research Paper: "Graph Contrastive Learning as a Versatile Foundation for Advanced scRNA-seq Data Analysis"☆11Nov 20, 2024Updated last year
- SMILE: Mutual Information Learning for Integration of Single Cell Omics Data☆11Mar 28, 2023Updated 3 years ago
- A novel method named stDiff investigates the potential of employing diffusion models for single-cell omics generation.☆27Mar 13, 2024Updated 2 years ago
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆83May 24, 2024Updated 2 years ago
- Cell-type Assignment and Module Extraction based on a heterogeneous graph neural network.☆10Oct 30, 2023Updated 2 years ago
- SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph con…☆265Feb 9, 2026Updated 6 months ago
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆43Jul 1, 2024Updated 2 years ago
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆106Dec 11, 2023Updated 2 years ago
- ☆10Jun 1, 2026Updated 2 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆14Dec 24, 2021Updated 4 years ago
- Spatial-Linked Alignment Tool☆95Dec 20, 2024Updated last year
- Tissue reassembly with generative AI☆32Jul 5, 2026Updated last month
- Code and data for Cell-o1.☆29Jul 22, 2026Updated last month
- Code for the article "Accelerated Forward-Backward Optimization using Deep Learning"☆12Sep 15, 2021Updated 4 years ago
- Multi-slice Spatial Transcriptome Domain Analysis.☆13Dec 13, 2024Updated last year
- Codebase for training the SubCell models☆24Aug 24, 2026Updated last week
- Deep Clustering Learning☆12Aug 8, 2019Updated 7 years ago
- a variational autoencoder method for clustering single-cell mutation data☆11Apr 17, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A tool for spatial omics single-modal clustering, multi-modal clustering, slice alignment, cross-modal alignment, multi-modal alignment, …☆20May 6, 2026Updated 3 months ago
- Scripts for data and figure generation in SAVER paper☆18Jan 5, 2021Updated 5 years ago
- A Spatial Transcriptomics Geospatial Profile Recovery System Tool through Anchors☆19Jul 24, 2025Updated last year
- Identify spatial domain☆93May 29, 2025Updated last year
- singleCellNet in Python☆18Aug 6, 2026Updated 3 weeks ago
- Her2 Breast Cancer Project☆106Nov 27, 2022Updated 3 years ago
- STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.☆53Apr 8, 2024Updated 2 years ago