sldyns / SpaHDmapLinks
Deep fusion of spatial transcriptomics and histology images for interpretable high-definition embedding mapping
☆11Updated 3 months ago
Alternatives and similar repositories for SpaHDmap
Users that are interested in SpaHDmap are comparing it to the libraries listed below
Sorting:
- a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution☆45Updated 4 months ago
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆26Updated last year
- ☆60Updated last year
- Detect hierarchical structures in cell-cell communications☆16Updated 10 months ago
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆41Updated 10 months ago
- Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data☆73Updated 11 months ago
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆40Updated last year
- ☆31Updated 9 months ago
- an integrative algorithm to distinguish spatially variable cell subclusters by reconstructing cells onto a pseudo space with spatial tran…☆23Updated 2 years ago
- Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…☆27Updated last year
- The benchmarking of spatial transcriptomics deconvolution methods☆33Updated 2 years ago
- ☆50Updated 2 months ago
- ☆15Updated 5 months ago
- ☆46Updated last year
- BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics …☆70Updated last month
- ☆58Updated 2 months ago
- UniCell Deconvolve Paper☆10Updated 2 years ago
- ☆21Updated 3 years ago
- End-to-end analysis of spatial multi-omics data☆99Updated last month
- A computational method scSemiProfiler that provides affordable single-cell data for large-scale disease cohorts using deep generative mod…☆25Updated 6 months ago
- Spatial direct messaging detected by bivariate Moran☆31Updated 5 months ago
- STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.☆49Updated last year
- CAST package☆41Updated last year
- Predict RNA velocity through deep learning☆71Updated 2 years ago
- Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics☆56Updated 6 months ago
- A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gen…☆61Updated 2 months ago
- Data processing and analysis workflow for GAGE-seq, a coassay of single-cell HiC and single-cell RNA-seq☆15Updated 2 months ago
- ☆126Updated last year
- ☆30Updated 7 months ago
- R implementation of GeneTrajectory☆68Updated last year