sldyns / SpaHDmapLinks
Deep fusion of spatial transcriptomics and histology images for interpretable high-definition embedding mapping
☆11Updated last month
Alternatives and similar repositories for SpaHDmap
Users that are interested in SpaHDmap are comparing it to the libraries listed below
Sorting:
- a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution☆41Updated 2 months ago
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆25Updated 11 months ago
- ☆59Updated last year
- ☆54Updated last week
- Detect hierarchical structures in cell-cell communications☆15Updated 8 months ago
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆39Updated 8 months ago
- an integrative algorithm to distinguish spatially variable cell subclusters by reconstructing cells onto a pseudo space with spatial tran…☆23Updated 2 years ago
- Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data☆72Updated 8 months ago
- Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…☆26Updated last year
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆37Updated last year
- Predict RNA velocity through deep learning☆70Updated last year
- End-to-end analysis of spatial multi-omics data☆93Updated 2 months ago
- ☆50Updated 4 months ago
- ☆45Updated last year
- The benchmarking of spatial transcriptomics deconvolution methods☆33Updated 2 years ago
- Spatial-Linked Alignment Tool☆88Updated 9 months ago
- ☆31Updated 7 months ago
- Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics☆54Updated 4 months ago
- ☆40Updated 2 years ago
- Data processing and analysis workflow for GAGE-seq, a coassay of single-cell HiC and single-cell RNA-seq☆13Updated this week
- A deep learning architecture for robust inference and accurate prediction of cellular dynamics☆68Updated 2 months ago
- ☆123Updated last year
- UniCell Deconvolve Paper☆10Updated 2 years ago
- ☆21Updated 3 years ago
- A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gen…☆56Updated 4 months ago
- ☆18Updated last year
- an SRT simulator for simulating multiple spatial variability in spatial resolved transcriptomics and generating unbiased simulated SRT da…☆25Updated 7 months ago
- ☆26Updated 2 years ago
- R implementation of GeneTrajectory☆65Updated last year
- Spatially resolved transcriptomic analysis☆60Updated 2 years ago