huBioinfo / CytoCommunity
A spatial omics data analysis tool that enables both unsupervised and supervised discovery of complex tissue cellular neighborhoods from cell phenotypes.
☆21Updated this week
Alternatives and similar repositories for CytoCommunity:
Users that are interested in CytoCommunity are comparing it to the libraries listed below
- Interoperability between SpatialData and the Xenium Explorer☆21Updated 8 months ago
- CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data☆14Updated last month
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆27Updated this week
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆38Updated this week
- ☆46Updated 2 weeks ago
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆34Updated 9 months ago
- ☆26Updated last month
- Spatial direct messaging detected by bivariate Moran☆26Updated 3 months ago
- The Single-Cell Pathology Landscape of Breast Cancer☆26Updated 5 years ago
- CAST package☆33Updated 5 months ago
- ☆24Updated last year
- Interactive applications of stlearn☆16Updated last year
- CeLEry: cell location recovery in single-cell RNA sequencing☆34Updated 2 months ago
- MUSE is a deep learning approach characterizing tissue composition through combined analysis of morphologies and transcriptional states f…☆34Updated 2 years ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆52Updated 10 months ago
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆23Updated last year
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆34Updated last month
- an SRT simulator for simulating multiple spatial variability in spatial resolved transcriptomics and generating unbiased simulated SRT da…☆24Updated last month
- ☆27Updated last year
- ☆14Updated 3 years ago
- Supervised cell type identification for scATAC-seq data☆13Updated last year
- ☆34Updated last year
- Sub-cellular spatial transcriptomics Cell Segmentation☆63Updated last year
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆77Updated last year
- STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.☆36Updated last year
- domain adaptation of spatial and single-cell transcriptome☆26Updated 6 months ago
- ☆31Updated 3 months ago
- ☆14Updated last week
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆43Updated 8 months ago
- Bayesian Analytics for Spatial Segmentation☆26Updated 6 months ago