huBioinfo / CytoCommunityLinks
A spatial omics data analysis tool that enables both unsupervised and supervised discovery of complex tissue cellular neighborhoods from cell phenotypes.
☆25Updated this week
Alternatives and similar repositories for CytoCommunity
Users that are interested in CytoCommunity are comparing it to the libraries listed below
Sorting:
- The Single-Cell Pathology Landscape of Breast Cancer☆27Updated 6 years ago
- Sub-cellular spatial transcriptomics Cell Segmentation☆68Updated 2 years ago
- ☆35Updated last week
- CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data☆34Updated 6 months ago
- ☆41Updated last week
- MorphLink: Bridging Cellular Morphological Behaviors and Molecular Dynamics in Multi-modal Spatial Omics☆16Updated last month
- ☆52Updated 3 months ago
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆116Updated 2 weeks ago
- MUSE is a deep learning approach characterizing tissue composition through combined analysis of morphologies and transcriptional states f…☆37Updated 3 years ago
- ☆28Updated 2 years ago
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆34Updated 9 months ago
- Scaling up spatial transcriptomics for large-sized tissues: uncovering cellular-level tissue architecture beyond conventional platforms☆44Updated 3 months ago
- Interoperability between SpatialData and the Xenium Explorer☆25Updated last year
- ☆19Updated 9 months ago
- ☆65Updated this week
- CeLEry: cell location recovery in single-cell RNA sequencing☆37Updated 11 months ago
- ☆53Updated 4 years ago
- CAST package☆42Updated last year
- Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging☆14Updated 6 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆41Updated 11 months ago
- ☆60Updated last year
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆95Updated 2 years ago
- Super-resolved spatial transcriptomics by deep data fusion☆73Updated 2 years ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆56Updated 7 months ago
- Pixie pipeline described in Liu et al., Robust phenotyping of highly multiplexed tissue imaging data using pixel-level clustering☆12Updated 2 years ago
- Interactive applications of stlearn☆15Updated 2 years ago
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆41Updated last year
- SEQUOIA: Digital profiling of cancer transcriptomes with grouped vision attention☆49Updated 8 months ago
- ☆21Updated 3 years ago
- Cell level integrated analysis of tissue histology and spatial transcriptomics☆30Updated 3 months ago