huBioinfo / CytoCommunity
A spatial omics data analysis tool that enables both unsupervised and supervised discovery of complex tissue cellular neighborhoods from cell phenotypes.
☆20Updated 8 months ago
Related projects ⓘ
Alternatives and complementary repositories for CytoCommunity
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆23Updated last month
- ☆25Updated 4 years ago
- ☆12Updated 3 weeks ago
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆23Updated 8 months ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆31Updated 6 months ago
- The Single-Cell Pathology Landscape of Breast Cancer☆21Updated 4 years ago
- CAST package☆23Updated 2 weeks ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆49Updated 5 months ago
- ☆38Updated last week
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆28Updated 10 months ago
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆28Updated 4 months ago
- ☆23Updated last month
- A probabilistic factor model for spatial transcriptomics data with subcellular resolution☆22Updated last year
- Methods for visualization and analysis of spatially-resolved gene expression☆13Updated last week
- ☆20Updated 2 years ago
- Spatial direct messaging detected by bivariate Moran☆24Updated 6 months ago
- Sub-cellular spatial transcriptomics Cell Segmentation☆55Updated last year
- ☆33Updated 7 months ago
- Matilda is a multi-task framework for learning from single-cell multimodal omics data. Matilda leverages the information from the multi-m…☆20Updated 2 months ago
- Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…☆18Updated 2 months ago
- Analyzing cellular niches in spatial transcriptomics data☆27Updated 5 months ago
- ☆48Updated 7 months ago
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆33Updated last month
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆68Updated 10 months ago
- MUSE is a deep learning approach characterizing tissue composition through combined analysis of morphologies and transcriptional states f…☆32Updated 2 years ago
- Spatial Single Cell transcriptomic library☆17Updated 7 months ago
- ☆32Updated this week
- ☆22Updated 10 months ago
- Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).☆18Updated 6 months ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆23Updated this week