Alternatives and similar repositories for CLEAR

Users that are interested in CLEAR are comparing it to the libraries listed below

• juexinwang / scGNN
  scGNN (single cell graph neural networks) for single cell clustering and imputation using graph neural networks
  ☆154Updated last year
• HantaoShu / DeepSEM
  ☆90Updated 2 years ago
• hui2000ji / scETM
  A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.
  ☆53Updated 4 years ago
• bm2-lab / scPerturBench
  Single-cell perturbation effects prediction benchmark
  ☆47Updated last week
• OSU-BMBL / deepmaps
  Single-cell biological network inference using a heterogeneous graph transformer
  ☆76Updated 10 months ago
• welch-lab / PerturbNet
  PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation
  ☆59Updated this week
• xiaoyeye / CCST
  Cell clustering for spatial transcriptomics data with graph neural network
  ☆64Updated 2 years ago
• theislab / nicheformer
  Repository for Nicheformer: a foundation model for single-cell and spatial omics
  ☆144Updated last month
• kodaim1115 / scMM
  ☆18Updated 4 years ago
• theislab / CellFlow
  Modeling complex perturbations with CellFlow
  ☆109Updated this week
• const-ae / linear_perturbation_prediction-Paper
  ☆69Updated 6 months ago
• JinmiaoChenLab / GraphST
  ☆145Updated last year
• caokai1073 / uniPort
  a unified single-cell data integration framework by optimal transport
  ☆34Updated last year
• ttgump / scDeepCluster_pytorch
  Pytorch implementation of scDeepCluster for Single Cell RNA-seq data
  ☆34Updated last year
• TencentAILabHealthcare / scPROTEIN
  ☆56Updated last year
• ttgump / scDCC
  scDCC: Single Cell Deep Constrained Clustering
  ☆43Updated last year
• yhr91 / GEARS_misc
  ☆25Updated last year
• ruiyi-zhang / scPretrain
  scPretrain: Multi-task self-supervised learning for cell type classification
  ☆23Updated 4 years ago
• ttgump / scDeepCluster
  scDeepCluster for Single Cell RNA-seq data
  ☆105Updated last year
• alexw16 / gridnet
  ☆15Updated 6 months ago
• theislab / chemCPA
  Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.
  ☆141Updated 11 months ago
• yuzhenmao / ScRAT
  Implementation of Phenotype prediction from single-cell RNA-seq data using attention-based neural networks (Bioinformatics 2024).
  ☆13Updated last year
• poseidonchan / TAPE
  Deep learning-based tissue compositions and cell-type-specific gene expression analysis with tissue-adaptive autoencoder (TAPE)
  ☆58Updated last year
• siyuh / Squidiff
  ☆104Updated 2 months ago
• theislab / sc-pert
  Models and datasets for perturbational single-cell omics
  ☆172Updated 3 years ago
• TencentAILabHealthcare / scpDeconv
  ☆11Updated last year
• OmicsML / CellPLM
  Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
  ☆101Updated last year
• EperLuo / scDiffusion
  A model developed for the generation of scRNA-seq data
  ☆82Updated 10 months ago
• xianglin226 / Benchmarking-Single-Cell-Perturbation
  Single-Cell (Perturbation) Model Library
  ☆88Updated last week
• nitzanlab / biolord
  ☆89Updated last year