CLEAR: Self-supervised contrastive learning for integrative single-cell RNA-seq data analysis
☆34Nov 30, 2022Updated 3 years ago
Alternatives and similar repositories for CLEAR
Users that are interested in CLEAR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆15Jun 17, 2021Updated 4 years ago
- ☆13Feb 15, 2024Updated 2 years ago
- ☆10Mar 11, 2022Updated 4 years ago
- scAce: an adaptive embedding and clustering method for scRNA-seq data☆12Sep 8, 2023Updated 2 years ago
- single-cell graph attentional clustering☆13Feb 10, 2022Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- PAST: a Prior-based self-Attention method for Spatial Transcriptomics☆12Mar 1, 2025Updated last year
- Spatiotemporal single-cell RNA sequencing of developing hearts reveals interplay between cellular differentiation and morphogenesis☆13Oct 31, 2023Updated 2 years ago
- Single Cell Multi-omics deep clustering☆30Jul 1, 2025Updated 10 months ago
- pytorch implementation for "RNA Secondary Structure Prediction By Learning Unrolled Algorithms"☆122Apr 7, 2024Updated 2 years ago
- Identify spatial domain☆90May 29, 2025Updated 11 months ago
- monae: multi-modal single-cell integration and imputation☆13Sep 13, 2024Updated last year
- Deep learning-based tissue compositions and cell-type-specific gene expression analysis with tissue-adaptive autoencoder (TAPE)☆61Apr 3, 2024Updated 2 years ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆51Apr 28, 2023Updated 3 years ago
- ☆16Feb 11, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- The main repository for ACTIVA: realistic single-cell RNA-seq generation with automatic cell-type identification using introspective vari…☆10Jan 23, 2023Updated 3 years ago
- Multi-omics data analysis for rare population inference using single-cell graph transformer☆23Nov 5, 2025Updated 5 months ago
- ☆18Oct 22, 2024Updated last year
- The official source code for "Deep single-cell RNA-seq data clustering with graph prototypical contrastive learning", accepted at Bioinfo…☆23Jul 14, 2023Updated 2 years ago
- scDeepCluster for Single Cell RNA-seq data☆106Jul 10, 2024Updated last year
- Comparison of dimensionality reduction methods☆30Mar 24, 2020Updated 6 years ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics (STAGATE software based on pyG framewo…☆68Nov 10, 2023Updated 2 years ago
- Python package for integrating and analyzing multiple single-cell datasets (A Python version of LIGER)☆30May 16, 2025Updated 11 months ago
- ☆39Apr 9, 2021Updated 5 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Sparse Canonical Correlation Analysis (sCCA)☆20Dec 3, 2021Updated 4 years ago
- ☆13Oct 8, 2021Updated 4 years ago
- Based off of the official Rostlab & PredictProtein website installation, as of 2020-09-07, the produced Docker image from this repository…☆14Feb 13, 2023Updated 3 years ago
- Clustering tool for biomolecular structural ensembles and data in general.☆10Aug 24, 2020Updated 5 years ago
- Research Paper: "Graph Contrastive Learning as a Versatile Foundation for Advanced scRNA-seq Data Analysis"☆10Nov 20, 2024Updated last year
- ☆67Nov 6, 2024Updated last year
- A hierarchical deep learning framework for ncRNA-protein interaction prediction.☆14Nov 25, 2022Updated 3 years ago
- Compute a 2D embedding of a data matrix given supervised class information.☆12Dec 8, 2019Updated 6 years ago
- ☆35Nov 7, 2022Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Imputation of single cell RNA-sequencing data with autoencoder☆16Jun 23, 2021Updated 4 years ago
- Deep learning for single-cell transcript counts☆89Mar 14, 2025Updated last year
- Multigrate: multiomic data integration for single-cell genomics☆33Updated this week
- ☆41Dec 4, 2023Updated 2 years ago
- ☆22Aug 20, 2024Updated last year
- conST: an interpretable multi-modal contrastive learning framework for spatial transcriptomics☆29Feb 16, 2024Updated 2 years ago
- Batch effects removal method based on deep autoencoder and adversarial learning☆24Dec 28, 2024Updated last year