Alternatives and similar repositories for STAligner

Users that are interested in STAligner are comparing it to the libraries listed below

• JinmiaoChenLab / SpatialGlue
  SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.
  ☆75Updated last year
• QuKunLab / SpatialBenchmarking
  ☆127Updated 3 years ago
• JiangBioLab / DeepST
  Identify spatial domain
  ☆87Updated 6 months ago
• JinmiaoChenLab / SEDR
  ☆64Updated last year
• gao-lab / SLAT
  Spatial-Linked Alignment Tool
  ☆90Updated last year
• QIFEIDKN / STAGATE_pyG
  Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics (STAGATE software based on pyG framewo…
  ☆61Updated 2 years ago
• QuKunLab / SPACEL
  ☆60Updated last year
• zhaofangyuan98 / SDMBench
  ☆42Updated last year
• zhanglabtools / STAGATE
  Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics
  ☆78Updated 3 years ago
• xiaoyeye / CCST
  Cell clustering for spatial transcriptomics data with graph neural network
  ☆64Updated 2 years ago
• JinmiaoChenLab / GraphST
  ☆143Updated last year
• drieslab / spatial-datasets
  overview of spatial datasets
  ☆76Updated last year
• zhoux85 / STAligner
  STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.
  ☆50Updated last year
• YangLabHKUST / SpatialScope
  A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models
  ☆74Updated last year
• QIFEIDKN / STAGATE
  Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics
  ☆49Updated 2 years ago
• XLearning-SCU / scBridge
  ☆21Updated last year
• SydneyBioX / scJoint
  ☆61Updated 2 years ago
• tabdelaal / SpaGE
  Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data
  ☆40Updated last year
• hongleir / SpaceFlow
  ☆32Updated 2 years ago
• zhanglab-wbgcas / STGRNS
  ☆30Updated 2 years ago
• JackieHanLab / TOSICA
  Transformer for One-Stop Interpretable Cell-type Annotation
  ☆146Updated last year
• raphael-group / paste
  Probabilistic Alignment of Spatial Transcriptomics Experiments
  ☆98Updated 9 months ago
• OSU-BMBL / deepmaps
  Single-cell biological network inference using a heterogeneous graph transformer
  ☆76Updated 10 months ago
• JinmiaoChenLab / SEDR_analyses
  ☆41Updated 2 years ago
• Lotfollahi-lab / nichecompass
  End-to-end analysis of spatial multi-omics data
  ☆101Updated last month
• ZJUFanLab / scCube
  an SRT simulator for simulating multiple spatial variability in spatial resolved transcriptomics and generating unbiased simulated SRT da…
  ☆25Updated 9 months ago
• mexchy1000 / CellDART
  domain adaptation of spatial and single-cell transcriptome
  ☆28Updated last year
• jianhuupenn / ItClust
  Iterative transfer learning with neural network improves clustering and cell type classification in single-cell RNA-seq analysis
  ☆54Updated 6 months ago
• azizilab / starfysh
  Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology
  ☆128Updated 6 months ago
• jianhuupenn / SpaGCN
  SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph con…
  ☆248Updated 2 years ago