MAGqual is a command line tool to evaluate the quality of metagenomic bins and generate recommended metadata in line with the MIMAG standards
☆15Aug 28, 2024Updated last year
Alternatives and similar repositories for MAGqual
Users that are interested in MAGqual are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- scripts for microbiome analysis☆12Jul 25, 2024Updated last year
- Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.☆26Feb 14, 2026Updated 2 months ago
- Lightweight bioinformatics pipeline for microbial genome recovery☆18Oct 23, 2025Updated 6 months ago
- ☆75Mar 10, 2024Updated 2 years ago
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆17May 18, 2020Updated 5 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- BEAV: Bacterial Element Annotation reVamped☆77Aug 21, 2025Updated 8 months ago
- Overview of our data for microbial genomic benchmarking☆37Apr 22, 2026Updated last week
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆13Jun 10, 2021Updated 4 years ago
- ☆25Jun 20, 2023Updated 2 years ago
- ☆36Nov 20, 2023Updated 2 years ago
- Gupta et al., TaxiBGC: a Taxonomy-guided Approach for Profiling Experimentally Characterized Microbial Biosynthetic Gene Clusters and Sec…☆15May 24, 2023Updated 2 years ago
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆29Jan 15, 2026Updated 3 months ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆36Jan 22, 2026Updated 3 months ago
- MacSyFinder models allowing for a systematic search of anti-phage systems☆25Feb 7, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆13Mar 14, 2024Updated 2 years ago
- A repo to reproduce the experiments in the YACHT manuscript☆11Nov 2, 2023Updated 2 years ago
- ☆33Jul 16, 2023Updated 2 years ago
- HOTSPOT is a hierarchical host prediction tool for plasmid contigs using Transformer.☆10Apr 22, 2024Updated 2 years ago
- Code used to analyse and plot metadata of metagenomic binning tools☆14Aug 22, 2024Updated last year
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆75Mar 3, 2026Updated last month
- A functional profiler for metagenomes using FracMinHash☆21Apr 20, 2026Updated last week
- ☆15Oct 14, 2023Updated 2 years ago
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆89Aug 13, 2024Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- This tool estimates the completeness of KEGG pathway modules from the presence or absence of KEGG orthologues (KOs)☆37Apr 7, 2026Updated 3 weeks ago
- 🎆 ✨ Wrapper around fireworks-js to bring fireworks to your Shiny application☆10Mar 8, 2026Updated last month
- ☆16May 22, 2023Updated 2 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆71Mar 9, 2026Updated last month
- Metaphor: a general-purpose workflow for assembly and binning of metagenomes☆40Nov 14, 2025Updated 5 months ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆43Sep 3, 2024Updated last year
- ☆17May 13, 2025Updated 11 months ago
- ☆83Apr 10, 2026Updated 3 weeks ago
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆21Dec 9, 2025Updated 4 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- MAGScoT - a MAG scoring and refinement tool☆44Apr 8, 2026Updated 3 weeks ago
- ☆21Apr 20, 2026Updated last week
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆54Oct 24, 2025Updated 6 months ago
- ☆17May 26, 2022Updated 3 years ago
- lsaBGC - suite for pan-BGC-omics analysis☆23Nov 21, 2025Updated 5 months ago
- Identify and remove contaminants from metagenome-assembled genomes☆18Feb 16, 2024Updated 2 years ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆55Sep 7, 2025Updated 7 months ago