ac1513 / MAGqualLinks
MAGqual is a command line tool to evaluate the quality of metagenomic bins and generate recommended metadata in line with the MIMAG standards
☆15Updated last year
Alternatives and similar repositories for MAGqual
Users that are interested in MAGqual are comparing it to the libraries listed below
Sorting:
- A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.☆44Updated 2 months ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆35Updated 2 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆32Updated last month
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆83Updated last week
- ☆24Updated 7 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆46Updated 6 months ago
- post processing of bacterial pangenome gene presence/absence matrices☆63Updated last week
- Bacterial GWAS analysis☆46Updated last week
- ☆20Updated last year
- Downstream processing of VAMB binning for Viral Elucidation☆54Updated last year
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆54Updated 3 months ago
- ☆56Updated 6 months ago
- IslandPath standalone software☆35Updated 2 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆71Updated 3 weeks ago
- Gene Absence Presence Identification tool.☆27Updated 10 months ago
- Automatic eukaryotic taxonomic classification☆29Updated 8 months ago
- Prophage Activity Estimator☆30Updated last year
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆64Updated 7 months ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆64Updated last month
- A workflow and scripts for large-scale antiSMASH analyses☆46Updated 9 months ago
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆70Updated this week
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆40Updated 3 years ago
- ☆16Updated 8 months ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Updated 3 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 9 months ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Updated 4 years ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆52Updated last month
- A tool for removing redundant genomes from a set of assemblies☆78Updated 4 months ago