Alternatives and similar repositories for MAGqual

Users that are interested in MAGqual are comparing it to the libraries listed below

• genotoul-bioinfo / Binette
  A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.
  ☆40Updated this week
• patrickwest / EukRep_Pipeline
  ☆24Updated 6 years ago
• cjneely10 / EukMetaSanity
  Structural and functional annotation of eukaryotic metagenome-assembled genomes
  ☆22Updated 2 years ago
• endixk / ezaai
  EzAAI - High Throughput Prokaryotic AAI Calculator
  ☆44Updated 2 months ago
• aldertzomer / RFPlasmid
  Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf
  ☆49Updated last year
• Shamir-Lab / SCAPP
  SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…
  ☆34Updated 2 years ago
• AlexanderLabWHOI / EUKulele
  Automatic eukaryotic taxonomic classification
  ☆28Updated 5 months ago
• Kalan-Lab / zol
  zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
  ☆63Updated last week
• RasmussenLab / phamb
  Downstream processing of VAMB binning for Viral Elucidation
  ☆50Updated last year
• gtonkinhill / panstripe
  post processing of bacterial pangenome gene presence/absence matrices
  ☆61Updated 7 months ago
• michaelkyu / PlasX
  PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture
  ☆38Updated 3 years ago
• hoelzer-lab / ribap
  A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs
  ☆30Updated 2 weeks ago
• gbouras13 / plassembler
  Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates
  ☆76Updated 2 weeks ago
• Serka-M / mmlong2
  Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes
  ☆51Updated this week
• wandreopoulos / deeplasmid
  ☆20Updated last year
• EBI-Metagenomics / genome_uploader
  Python script to upload bins and MAGs to ENA (European Nucleotide Archive)
  ☆25Updated this week
• allind / EukDetect
  ☆53Updated 3 months ago
• AlexanderLabWHOI / EukHeist
  ☆26Updated 2 years ago
• LottePronk / whokaryote
  Classify metagenomic contigs as eukaryotic or prokaryotic
  ☆41Updated 2 years ago
• Wanli-HE / Plaspline
  ☆20Updated 2 years ago
• AnantharamanLab / PropagAtE
  Prophage Activity Estimator
  ☆28Updated last year
• MigleSur / GenAPI
  Gene Absence Presence Identification tool.
  ☆27Updated 6 months ago
• xthua / bacant
  This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.
  ☆21Updated 2 years ago
• dportik / LRSW-Taxonomic-Profiling-Tutorial
  Perform taxonomic profiling analyses for long-read shotgun metagenomic datasets. Developed for the Long Read Sequencing Workshop 2022 at …
  ☆13Updated 3 years ago
• brinkmanlab / islandpath
  IslandPath standalone software
  ☆33Updated last year
• raw-lab / MetaCerberus
  Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…
  ☆63Updated 5 months ago
• leylabmpi / Struo
  Ley Lab MetaGenome Profiler DataBase generator
  ☆49Updated 2 years ago
• irycisBioinfo / PATO
  PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.
  ☆62Updated 2 years ago
• AroneyS / binchicken
  Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly
  ☆47Updated 2 weeks ago
• rrwick / Core-SNP-filter
  a tool to filter sites in a FASTA-format whole-genome pseudo-alignment
  ☆63Updated 3 months ago