MAGqual is a command line tool to evaluate the quality of metagenomic bins and generate recommended metadata in line with the MIMAG standards
☆16Aug 28, 2024Updated 2 years ago
Alternatives and similar repositories for MAGqual
Users that are interested in MAGqual are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆15Oct 14, 2023Updated 3 years ago
- scripts for microbiome analysis☆12Jul 25, 2024Updated 2 years ago
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆31Jan 15, 2026Updated 9 months ago
- Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.☆26Feb 14, 2026Updated 8 months ago
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆14Mar 14, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Deepurify is a tool to filter the contaminated contigs in a MAG with a language model.☆24Jun 3, 2025Updated last year
- Lightweight bioinformatics pipeline for microbial genome recovery☆18Oct 23, 2025Updated last year
- ☆27Jun 20, 2023Updated 3 years ago
- ContScout sequence contamination filter tool☆26Dec 28, 2025Updated 10 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆66Sep 1, 2026Updated last month
- ☆86Aug 23, 2026Updated 2 months ago
- ☆18Jun 5, 2026Updated 4 months ago
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆38Apr 26, 2026Updated 6 months ago
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆95Aug 13, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- BEAV: Bacterial Element Annotation reVamped☆78Aug 21, 2025Updated last year
- Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆19Oct 7, 2026Updated 3 weeks ago
- MAGinator - Accurate SNV calling and profiling of MAGs☆29Mar 23, 2026Updated 7 months ago
- ☆33Jul 16, 2023Updated 3 years ago
- Identify and remove contaminants from metagenome-assembled genomes☆18Feb 16, 2024Updated 2 years ago
- SemiBin: metagenomics binning with self-supervised deep learning☆175Oct 13, 2026Updated 2 weeks ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆38Jun 4, 2026Updated 4 months ago
- Tool for unsupervised contig binning from viral metagenomes☆18Oct 22, 2021Updated 5 years ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆58May 8, 2026Updated 5 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A hybrid assembly and MAG recovery pipeline (and more!)☆120Oct 21, 2026Updated last week
- ☆65Feb 27, 2024Updated 2 years ago
- Jaeger is a quick and precise tool for detecting viruses in sequence assemblies.☆10Oct 14, 2026Updated 2 weeks ago
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆17May 18, 2020Updated 6 years ago
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆23Aug 14, 2025Updated last year
- A fine-tuned ESM-2 model to accurately detect phage depolymerases in their genomes.☆15Feb 5, 2025Updated last year
- GCUA - General Codon Usage Analysis (v2)☆11Nov 5, 2025Updated 11 months ago
- A Snakemake workflow for recovery of plastid genomes from metagenomic samples☆11Nov 16, 2024Updated last year
- PANPROVA: PANgenomic PROkaryotic eVolution of full Assemblies☆10Jun 14, 2026Updated 4 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Fast tool to build the core genome of prokaryotic genomes. Can handle large datasets. Dependencis: Usearch & Numpy☆10Nov 26, 2025Updated 11 months ago
- Grabbing genome accessions & download info based on taxonomy, using the NCBI REST API, w00t☆12Feb 23, 2025Updated last year
- Ensemble binning strategies for combining the output of multiple binning methods.☆23Mar 11, 2023Updated 3 years ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆41Sep 28, 2025Updated last year
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆73Aug 27, 2026Updated 2 months ago
- A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metag…☆107Oct 19, 2026Updated last week
- ☆36Aug 7, 2026Updated 2 months ago