ac1513 / MAGqualLinks
MAGqual is a command line tool to evaluate the quality of metagenomic bins and generate recommended metadata in line with the MIMAG standards
☆14Updated 10 months ago
Alternatives and similar repositories for MAGqual
Users that are interested in MAGqual are comparing it to the libraries listed below
Sorting:
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆59Updated 3 months ago
- A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.☆35Updated this week
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆70Updated 3 weeks ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆42Updated last week
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆49Updated last year
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆32Updated 2 years ago
- tiara – a tool for DNA sequence classification☆63Updated last year
- ☆25Updated 6 years ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆50Updated last year
- post processing of bacterial pangenome gene presence/absence matrices☆60Updated 4 months ago
- ☆52Updated 2 weeks ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆46Updated 2 weeks ago
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆84Updated 2 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated 2 weeks ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆49Updated last month
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆37Updated 3 years ago
- ☆20Updated 10 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆29Updated 8 months ago
- Identify phage regions in bacterial genomes for masking purposes☆33Updated 5 years ago
- IslandPath standalone software☆33Updated last year
- A tool for removing redundant genomes from a set of assemblies☆71Updated last year
- Bacterial GWAS analysis☆42Updated this week
- Tool to estimate genome quality of microbial eukaryotes☆38Updated 5 months ago
- Prophage Activity Estimator☆26Updated last year
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆59Updated last year
- ☆26Updated 2 years ago
- A python library for predicting phage lifestyle based on genome sequence☆38Updated last year
- GTDB taxonomy taxdump files with trackable TaxIds☆55Updated 2 months ago
- Improvement of metagenome-assembled genomes☆53Updated 5 years ago