MorrellLAB / File_Conversions
Scripts to convert between file formats for various analyses
☆15Updated last month
Alternatives and similar repositories for File_Conversions:
Users that are interested in File_Conversions are comparing it to the libraries listed below
- Computational Analysis of Gene Expression Evolution☆38Updated last month
- Codes for the lettuce resequencing project in 2020☆30Updated 3 years ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- A haplotype analysis toolkit for natural variation study.☆30Updated last year
- A shiny application to visualize MCscan result☆35Updated 2 years ago
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆23Updated last week
- Yet another Hi-C scaffolding tool☆20Updated 4 months ago
- Likelihood-based Selective Sweep Detection☆37Updated last year
- scripts for sequence and feature conversion, annotation, analysis ...☆27Updated this week
- Various scripts that I have created that are useful for genome annotation (repeats & proteins)☆16Updated 3 years ago
- PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics☆35Updated last year
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago
- Plant genome assembly and annotation pipeline using snakemake☆42Updated last year
- Genome Annotation Pipeline☆35Updated 7 months ago
- ☆21Updated 5 years ago
- Methods and recipes for Plant Genome Annotation - Transposable Elements☆19Updated last year
- Pipelines and scripts for analysing RNA-seq,genome and other sequecing data.☆9Updated 5 years ago
- Easily construct the ML species tree with single-copy gene shared by different species.☆25Updated 6 years ago
- Full GATK SNP calling pipeline☆21Updated last year
- ☆42Updated 10 months ago
- A pipeline for isoseq☆23Updated 6 years ago
- Sex assignment through coverage☆17Updated last year
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Updated 11 months ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆38Updated 6 months ago
- Tutorial on using popular tools for learning about population history☆49Updated 6 years ago
- Deleterious mutation prediction pipeline☆13Updated 3 months ago
- BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions☆34Updated 3 months ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- Set of scripts to manupulate tab-delimited genotype calls files as well as to convert calls-files to other popular formats.☆10Updated 4 years ago