MorrellLAB / File_Conversions
Scripts to convert between file formats for various analyses
☆15Updated this week
Alternatives and similar repositories for File_Conversions:
Users that are interested in File_Conversions are comparing it to the libraries listed below
- Computational Analysis of Gene Expression Evolution☆36Updated 3 weeks ago
- Codes for the lettuce resequencing project in 2020☆28Updated 3 years ago
- A haplotype analysis toolkit for natural variation study.☆29Updated last year
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 3 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆22Updated 4 months ago
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Updated 10 months ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆37Updated 5 months ago
- Yet another Hi-C scaffolding tool☆19Updated 3 months ago
- Easily construct the ML species tree with single-copy gene shared by different species.☆25Updated 6 years ago
- ☆23Updated last year
- A shiny application to visualize MCscan result☆34Updated 2 years ago
- Various scripts that I have created that are useful for genome annotation (repeats & proteins)☆16Updated 2 years ago
- ☆16Updated 4 months ago
- A tool for performing collinearity-incorporating homology inference☆28Updated last year
- Code for Article "A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species r…☆17Updated 8 months ago
- Methods and recipes for Plant Genome Annotation - Transposable Elements☆19Updated last year
- A pipeline for isoseq☆23Updated 6 years ago
- Integrate multiple genome assemblies into a pangenome graph☆32Updated 2 years ago
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆35Updated last week
- ☆42Updated 9 months ago
- ☆9Updated 9 years ago
- Pipelines and scripts for analysing RNA-seq，genome and other sequecing data.☆9Updated 5 years ago
- scripts for sequence and feature conversion, annotation, analysis ...☆27Updated 9 months ago
- Transposable Elements MOvement detection using LOng reads☆21Updated 2 months ago
- Likelihood-based Selective Sweep Detection☆37Updated last year
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆28Updated 3 years ago
- read and analyse RepeatMasker output☆24Updated last year
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago