MorrellLAB / File_ConversionsLinks
Scripts to convert between file formats for various analyses
☆16Updated 8 months ago
Alternatives and similar repositories for File_Conversions
Users that are interested in File_Conversions are comparing it to the libraries listed below
Sorting:
- scripts for sequence and feature conversion, annotation, analysis ...☆28Updated 10 months ago
- ☆29Updated 2 years ago
- scripts for the project of seven thaliana genomes assembly☆42Updated 4 years ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆27Updated last year
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆32Updated 4 years ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Updated last year
- Computational Analysis of Gene Expression Evolution☆45Updated 4 months ago
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆18Updated 6 years ago
- Set of scripts to manupulate tab-delimited genotype calls files as well as to convert calls-files to other popular formats.☆10Updated 5 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆30Updated 4 months ago
- Full GATK SNP calling pipeline☆22Updated 2 months ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆45Updated last year
- methods for orphan gene prediction paper optimization☆25Updated 4 years ago
- Yet another Hi-C scaffolding tool☆22Updated last year
- genome annotation (RNAseq and TE) pipeline (draft)☆12Updated 4 months ago
- A haplotype analysis toolkit for natural variation study.☆31Updated 2 years ago
- ☆16Updated 2 years ago
- Sorting and subsampling phylogenomic datasets☆28Updated 9 months ago
- Codes for the lettuce resequencing project in 2020☆31Updated 4 years ago
- Detecting NUMTs from WGS☆13Updated 2 years ago
- R-package: Calculation of haplotype blocks and libraries☆35Updated 5 months ago
- ☆16Updated last year
- ☆11Updated 10 months ago
- Killifish genomics scripts☆12Updated 4 years ago
- A pipeline to use Lep-Map3 to create linkage maps and LepAnchor for anchoring and orienting genome assemblies with said linkage maps.☆14Updated 6 months ago
- Easily construct the ML species tree with single-copy gene shared by different species.☆27Updated 7 years ago
- Scripts for NGS processing☆17Updated 8 years ago
- Guide through code for a Minimmap2 genome alignment and a seq-seq-pan pan-genome alignment with visualizations in R. The tutorial present…☆19Updated 8 months ago
- Scripts and notes on how to analyse ancient DNA genotype data to understand population structure☆42Updated 2 years ago
- R package to draw syntenic plots in 3 different styles☆42Updated 4 months ago