MorrellLAB / File_Conversions
Scripts to convert between file formats for various analyses
☆16Updated 2 months ago
Alternatives and similar repositories for File_Conversions:
Users that are interested in File_Conversions are comparing it to the libraries listed below
- Codes for the lettuce resequencing project in 2020☆30Updated 3 years ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- Computational Analysis of Gene Expression Evolution☆40Updated last week
- ☆24Updated last year
- Various scripts that I have created that are useful for genome annotation (repeats & proteins)☆16Updated 3 years ago
- Likelihood-based Selective Sweep Detection☆37Updated last year
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆24Updated 3 weeks ago
- A shiny application to visualize MCscan result☆36Updated 2 years ago
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆26Updated 7 months ago
- A haplotype analysis toolkit for natural variation study.☆30Updated last year
- Yet another Hi-C scaffolding tool☆19Updated 5 months ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆38Updated 7 months ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆16Updated last year
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- read and analyse RepeatMasker output☆24Updated last year
- scripts for sequence and feature conversion, annotation, analysis ...☆27Updated 3 weeks ago
- ☆16Updated 6 months ago
- Convergent substitution detection tool based on the PCOC model☆30Updated 3 years ago
- Analyses of sex chromosome evolution in songbirds☆16Updated 5 years ago
- PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics☆35Updated last year
- ArchaicSeeker is a series of software for detecting archaic introgression sequences and reconstructing introgression history. The latest …☆18Updated last year
- Plant genome assembly and annotation pipeline using snakemake☆42Updated last year
- Methods and recipes for Plant Genome Annotation - Transposable Elements☆19Updated last year
- BITACORA: A Bioinformatics tool for gene family annotation☆43Updated 11 months ago
- Easily construct the ML species tree with single-copy gene shared by different species.☆25Updated 6 years ago
- ☆9Updated 9 years ago
- Deleterious mutation prediction pipeline☆13Updated 3 months ago
- Genome Annotation Pipeline☆35Updated 7 months ago