Alternatives and similar repositories for imputation_accuracy_calculator

Users that are interested in imputation_accuracy_calculator are comparing it to the libraries listed below

• MorrellLAB / File_Conversions
  Scripts to convert between file formats for various analyses
  ☆16Updated 9 months ago
• ShiuLab / Manuscript_Code
  Repository for code used for publications
  ☆30Updated 3 months ago
• melop / killigenomics
  Killifish genomics scripts
  ☆12Updated 4 years ago
• jaredgk / PPP
  Repository for pipeline code
  ☆26Updated last year
• Shuhua-Group / CPC-graph-based-NGS-pipeline
  A graph-based pipeline used to call/genotype snvs/indels/SVs from NGS data
  ☆17Updated 5 months ago
• ZhaoTingzju / GWAS_script
  Working on cotton resequencing
  ☆11Updated 5 years ago
• thackl / seq-scripts
  scripts for sequence and feature conversion, annotation, analysis ...
  ☆28Updated 10 months ago
• pablobio / GALLO
  Genomic Annotation in Livestock for positional candidate LOci
  ☆13Updated 4 years ago
• therkildsen-lab / genomic-data-analysis
  Pipelines for analyzing genomic or transcriptomic data
  ☆17Updated last year
• galikbence / genome_annotation
  Pipeline for eukaryotic genome annotation based on external evidences
  ☆13Updated 2 years ago
• YinYuan-001 / muntjac_code
  ☆11Updated 4 years ago
• evodify / genotype-files-manipulations
  Set of scripts to manupulate tab-delimited genotype calls files as well as to convert calls-files to other popular formats.
  ☆10Updated 5 years ago
• darencard / GenomeAnnotation
  Various scripts that I have created that are useful for genome annotation (repeats & proteins)
  ☆16Updated 3 years ago
• therkildsen-lab / data-processing
  Scripts for going from raw .fastq files to processed and quality-checked .bam files for downstream analysis
  ☆14Updated 4 years ago
• dcgerard / updog
  Flexible Genotyping of Polyploids using Next Generation Sequencing Data
  ☆31Updated last week
• Rosemeis / HaploNet
  Haplotype and population structure inference using neural networks.
  ☆28Updated last year
• marieBvr / TEs_genes_relationship_pipeline
  Distribution of TEs and their relationship to genes in host genome
  ☆24Updated 2 years ago
• munch-group / genomic-thinking
  Course in population genomics at BiRC
  ☆12Updated last week
• ryhui / imputation-pipeline
  ☆11Updated 5 years ago
• johanzi / gwas_gemma
  Perform GWAS with gemma in a simple pipeline
  ☆27Updated 9 months ago
• LAILAB-CAU / update-Mo17
  ☆29Updated 2 years ago
• wrf / graphphylo
  visualization of phylogenetic output files
  ☆14Updated 2 years ago
• mmollina / MAPpoly
  Genetic maps in autopolyploids
  ☆31Updated last month
• yexinhai / genomics-analysis-pipeline
  Some useful bioinformatics pipelines for genomics analysis
  ☆14Updated 4 years ago
• KosukeHamazaki / RAINBOWR
  Reliable Association INference By Optimizing Weights with R (R package for SNP-set GWAS and multi-kernel mixed model)
  ☆24Updated 4 months ago
• sanjaynagi / rna-seq-pop
  Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
  ☆18Updated 10 months ago
• roberta-davidson / ADMIXTURE-smartPCA-PLINK-and-EIGENSOFT
  Scripts and notes on how to analyse ancient DNA genotype data to understand population structure
  ☆43Updated 2 years ago
• WeiWei060512 / NUMTs-detection
  Detecting NUMTs from WGS
  ☆13Updated 2 years ago
• oeco28 / Cacao_Genomics
  This is a basic repository with all the scripts necessary to reconstruct the data analysis from our work on the 200 Genomes
  ☆12Updated 7 years ago
• LeanQ / SPLITREADER
  Split-read pipeline for the identification of non-reference TE insertions with TSDs
  ☆25Updated 5 years ago