tvkent / GERPplusplusLinks
GERP++ code from Sidow Lab modified by Kevin Thornton to compile properly.
☆21Updated 8 years ago
Alternatives and similar repositories for GERPplusplus
Users that are interested in GERPplusplus are comparing it to the libraries listed below
Sorting:
- A shiny application to visualize MCscan result☆37Updated 2 years ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆42Updated 10 months ago
- ☆24Updated 8 years ago
- Sex assignment through coverage☆19Updated 2 months ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆32Updated 3 months ago
- scripts for the project of seven thaliana genomes assembly☆40Updated 4 years ago
- Useful bioinformatic scripts☆57Updated 8 months ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 5 months ago
- ☆44Updated 8 years ago
- Tutorial on using popular tools for learning about population history☆51Updated 7 years ago
- ☆50Updated last month
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆27Updated 6 years ago
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆36Updated last year
- ☆24Updated 2 years ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆33Updated 10 months ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆58Updated 2 years ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆67Updated 4 years ago
- Infer demographic history with the Moran model☆47Updated last month
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆35Updated last year
- Assessing confidence in introgression among four populations☆27Updated 4 years ago
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- Genome Annotation Pipeline☆36Updated 11 months ago
- Deleterious mutation prediction pipeline☆13Updated 7 months ago
- ☆42Updated last year
- Portable solution to generate genome alignment chains using lastz☆57Updated 2 months ago
- TSEBRA: Transcript Selector for BRAKER☆47Updated 8 months ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆49Updated 3 weeks ago
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆43Updated 2 months ago
- ☆40Updated 2 years ago