Alternatives and similar repositories for GERPplusplus

Users that are interested in GERPplusplus are comparing it to the libraries listed below

• popgenDK / SATC
  Sex assignment through coverage
  ☆20Updated 5 months ago
• wjian8 / psvcp_v1.01
  Pan-genome Construction and Population Structure Variation Calling pipeline
  ☆44Updated last year
• schneebergerlab / AMPRIL-genomes
  scripts for the project of seven thaliana genomes assembly
  ☆42Updated 4 years ago
• harvardinformatics / degenotate
  ☆53Updated 5 months ago
• AnimalGenomicsETH / bovine-graphs
  Integrate multiple genome assemblies into a pangenome graph
  ☆35Updated 3 years ago
• phyloacc / PhyloAcc
  PhyloAcc a software to detect the changes of conservation of a genomic region
  ☆33Updated 3 weeks ago
• JiangYuLab / CNVcaller
  ☆42Updated last year
• zeeev / smartie-sv
  calling SVs from Blasr contig level alignments
  ☆54Updated 7 years ago
• molevol-ub / bitacora
  BITACORA: A Bioinformatics tool for gene family annotation
  ☆49Updated 5 months ago
• shilpagarg / DipAsm
  ☆78Updated 5 years ago
• simon19891216 / CentIER
  ☆39Updated 3 months ago
• baozg / phased-assembly-check
  ☆31Updated 10 months ago
• phasegenomics / juicebox_scripts
  A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats
  ☆69Updated 4 years ago
• alachins / raisd
  RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors
  ☆36Updated 2 years ago
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆59Updated 2 years ago
• SwiftSeal / resistify
  Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…
  ☆40Updated last week
• hewm2008 / VCF2Dis
  VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files
  ☆50Updated 2 months ago
• joepickrell / pophistory-tutorial
  Tutorial on using popular tools for learning about population history
  ☆52Updated 7 years ago
• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆37Updated 3 years ago
• Sunhh / NGS_data_processing
  Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.
  ☆56Updated last week
• HuffordLab / GenomeQC
  ☆33Updated 4 years ago
• ngarud / SelectionHapStats
  SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…
  ☆27Updated 7 years ago
• MorrellLAB / BAD_Mutations
  Deleterious mutation prediction pipeline
  ☆13Updated 11 months ago
• lurebgi / BOPsexChr
  Analyses of sex chromosome evolution in songbirds
  ☆16Updated 6 years ago
• sjteresi / TE_Density
  Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…
  ☆35Updated last year
• PacificBiosciences / HiFiCNV
  Copy number variant caller and depth visualization utility for PacBio HiFi reads
  ☆44Updated last year
• wk8910 / bio_tools
  Useful bioinformatic scripts
  ☆58Updated 11 months ago
• nclark-lab / RERconverge
  Analysis of convergence between organismal traits and DNA/protein sequences
  ☆59Updated 2 weeks ago
• carolindahms / TreeMix
  Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…
  ☆39Updated last year
• popgenmethods / momi2
  Infer demographic history with the Moran model
  ☆49Updated 5 months ago