Alternatives and similar repositories for GERPplusplus

Users that are interested in GERPplusplus are comparing it to the libraries listed below

• MorrellLAB / BAD_Mutations
  Deleterious mutation prediction pipeline
  ☆13Updated 9 months ago
• wjian8 / psvcp_v1.01
  Pan-genome Construction and Population Structure Variation Calling pipeline
  ☆43Updated last year
• rivasiker / autocoalhmm
  Automated pipeline for running CoalHMM
  ☆13Updated last year
• JiangYuLab / CNVcaller
  ☆42Updated last year
• JiaoLab2021 / varigraph
  An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes
  ☆39Updated 3 months ago
• sjteresi / TE_Density
  Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…
  ☆34Updated 11 months ago
• alachins / raisd
  RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors
  ☆36Updated last year
• schneebergerlab / AMPRIL-genomes
  scripts for the project of seven thaliana genomes assembly
  ☆41Updated 4 years ago
• wk8910 / bio_tools
  Useful bioinformatic scripts
  ☆57Updated 9 months ago
• tsackton / linked-selection
  ☆24Updated 8 years ago
• JanaSperschneider / FindTelomeres
  A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files
  ☆34Updated 3 years ago
• PacificBiosciences / HiFiCNV
  Copy number variant caller and depth visualization utility for PacBio HiFi reads
  ☆43Updated 10 months ago
• alachins / sweed
  Likelihood-based Selective Sweep Detection
  ☆40Updated last year
• baozg / assembly-annotation-pipeline
  Plant genome assembly and annotation pipeline using snakemake
  ☆47Updated 4 months ago
• phyloacc / PhyloAcc
  PhyloAcc a software to detect the changes of conservation of a genomic region
  ☆32Updated 5 months ago
• simon19891216 / CentIER
  ☆37Updated last month
• Longhui-Ren / Ancestral_Genome_Reconstruction
  Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO
  ☆13Updated 6 years ago
• 0xTCG / biser
  A fast tool for detecting and decomposing segmental duplications in genome assemblies
  ☆50Updated 2 months ago
• vgteam / giraffe-sv-paper
  ☆42Updated last year
• hillerlab / GeneLossPipe
  ☆24Updated 2 years ago
• AnimalGenomicsETH / bovine-graphs
  Integrate multiple genome assemblies into a pangenome graph
  ☆35Updated 3 years ago
• zeeev / smartie-sv
  calling SVs from Blasr contig level alignments
  ☆54Updated 7 years ago
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆58Updated 2 years ago
• mmatschiner / F4
  Assessing confidence in introgression among four populations
  ☆27Updated 4 years ago
• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆37Updated 2 years ago
• phasegenomics / juicebox_scripts
  A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats
  ☆68Updated 4 years ago
• baozg / phased-assembly-check
  ☆30Updated 8 months ago
• ShiuLab / PseudogenePipeline
  ☆40Updated 2 years ago
• qiao-xin / Scripts_for_GB
  The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".
  ☆28Updated 4 years ago
• joepickrell / pophistory-tutorial
  Tutorial on using popular tools for learning about population history
  ☆51Updated 7 years ago