wzthu / esATACLinks
Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis
☆23Updated 2 years ago
Alternatives and similar repositories for esATAC
Users that are interested in esATAC are comparing it to the libraries listed below
Sorting:
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- ☆20Updated 6 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 4 years ago
- ☆32Updated 5 years ago
- ☆34Updated 5 years ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago
- R package for robust clustering of single cell RNA sequencing data☆39Updated last year
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆49Updated 4 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆54Updated 4 years ago
- Processing scripts for single cell DNA sequencing on the Tapestri platform☆24Updated 2 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- <<------ Use SnapATAC!!☆25Updated 6 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆33Updated 2 years ago
- R code for single-cell analysis of intestinal epithelial cells☆22Updated 7 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- ☆17Updated 6 years ago
- Repo for website and other code for mouse sci-ATAC-seq project☆28Updated 4 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆77Updated 2 years ago
- A pipeline for scRNA-seq data analysis☆14Updated 2 months ago
- scRNA-seq cell type identification☆43Updated 5 years ago
- scWGCNA☆60Updated 2 years ago
- A tool for removing doublets from single-cell RNA-seq data☆74Updated 4 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆30Updated 2 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆45Updated last year
- Single cell RNA-seq analysis bundle☆34Updated 5 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated last year
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated last year
- ☆31Updated 4 months ago
- ☆27Updated 3 years ago