Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis
☆24Aug 8, 2022Updated 4 years ago
Alternatives and similar repositories for esATAC
Users that are interested in esATAC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Scasat is a single cell ATAC-seq preprocessing and analysis pipeline☆35Feb 27, 2019Updated 7 years ago
- ☆12Mar 18, 2026Updated 7 months ago
- chromatin Variability Across Regions (of the genome!)☆198May 1, 2026Updated 6 months ago
- ☆15Jun 3, 2019Updated 7 years ago
- CALISTA: Clustering And Lineage Inference in Single Cell Transcriptional Analysis☆10May 16, 2019Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A toolkit for working with ATAC-seq data.☆24Jan 22, 2026Updated 9 months ago
- Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy☆29Dec 22, 2022Updated 3 years ago
- Analysis pipeline for ATAC-seq Data☆65Sep 2, 2021Updated 5 years ago
- ClusterMap is an R package to analyze and compare two or more single cell expression datasets.☆22Jan 17, 2023Updated 3 years ago
- SLICER algorithm for inferring cell trajectories. See details in Welch et al., Genome Biology 2016: http://genomebiology.biomedcentral.co…☆15Oct 17, 2017Updated 9 years ago
- ☆24Jul 3, 2019Updated 7 years ago
- Analysis Pipeline for Single Cell ATAC-seq☆321Apr 27, 2023Updated 3 years ago
- ATAC-seq and DNase-seq processing pipeline☆166Jun 21, 2022Updated 4 years ago
- Algorithms for single-cell analysis☆29Jul 19, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Tools and methods for analysis of single cell assay data in R☆266Oct 17, 2025Updated last year
- ☆148Jan 7, 2019Updated 7 years ago
- Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets☆107Aug 2, 2023Updated 3 years ago
- From IDAT to beta.☆25Jul 13, 2018Updated 8 years ago
- A classifier for tumor microenvironment subtype based on ensemble machine learning models☆11Jul 20, 2025Updated last year
- Pipeline for Analysis of ChIP-Seq data☆10May 20, 2026Updated 5 months ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆78Feb 27, 2023Updated 3 years ago
- COMUNET: a tool to explore and visualize intercellular communication☆13Apr 15, 2020Updated 6 years ago
- Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data.☆44Mar 3, 2017Updated 9 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆14Aug 3, 2022Updated 4 years ago
- Shimmer is a software package for the characterization of genetic differences between two very similar samples, e.g., a tumor sample and …☆12Jan 12, 2023Updated 3 years ago
- Inference of switch-like differential expression along single-cell trajectories☆23Oct 24, 2017Updated 9 years ago
- R package to identify genes with differential distributions in single-cell RNA-seq☆35Mar 24, 2022Updated 4 years ago
- A tool to assess the quality and distribution of genomic data☆18Sep 3, 2021Updated 5 years ago
- fast hierarchical clustering for large-scale single-cell data☆11Jul 11, 2021Updated 5 years ago
- ENCODE ATAC-seq pipeline☆460Jul 18, 2024Updated 2 years ago
- Probabilistic pseudotime for single-cell RNA-seq data☆11Oct 6, 2017Updated 9 years ago
- Single Cell multimodal data scripts for downloading datasets☆20May 20, 2026Updated 5 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Version 2.1.0 released☆23Sep 16, 2019Updated 7 years ago
- Causal Variant Evidence Mapping with Non-parametric resampling☆12Dec 16, 2020Updated 5 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆51Sep 1, 2023Updated 3 years ago
- R package to do the Ligand Receptor Analysis Visualization☆50Aug 18, 2026Updated 2 months ago
- The deconvR is an R package designed for analyzing deconvolution of the bulk sample(s) using an atlas of reference omic signature profile…☆11Jul 22, 2026Updated 3 months ago
- scDataviz: single cell dataviz and downstream analyses☆68Sep 24, 2021Updated 5 years ago
- ☆20Feb 23, 2022Updated 4 years ago