ProtProtocols / IsoProt
Protocol of the analysis of iTRAQ/TMT proteomics data including quantification, statistical analysis and maybe clustering
☆12Updated 5 years ago
Alternatives and similar repositories for IsoProt:
Users that are interested in IsoProt are comparing it to the libraries listed below
- R package for analysing proteomics data☆49Updated last year
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆16Updated 3 years ago
- Wrapper R scripts for performing a weighted-gene co-expression network analysis (WGCNA)☆28Updated 9 years ago
- Clone of the Bioconductor repository for the RUVSeq package, see https://bioconductor.org/packages/devel/bioc/html/RUVSeq.html for the of…☆13Updated 2 years ago
- ☆17Updated 3 months ago
- DEqMS is a tool for quantitative proteomic analysis☆23Updated 3 months ago
- This is the ensembldb development repository.☆35Updated 7 months ago
- Isoform-level functional RNA-Seq analysis 🧬☆22Updated 3 months ago
- Proteomics label-free quantification (LFQ) analysis pipeline☆33Updated 2 months ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆24Updated last year
- A Shiny web server for interactive visualization and analysis of RNA-seq data☆22Updated 3 years ago
- Shiny-Seq: A web based interactive pipeline to analyze RNA-Seq data☆16Updated 7 years ago
- Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor☆22Updated last month
- A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R libraries☆18Updated 5 years ago
- A guide to running MaxQuant in Linux☆32Updated 5 years ago
- HOT regions paper☆11Updated 5 years ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated last year
- A tool for large scale omics datasets evaluation☆24Updated last year
- ☆26Updated 2 years ago
- Detecting Aberrant Splicing Events from RNA-sequencing data☆16Updated 3 months ago
- Software Package for Transcription Factor Binding Site (TFBS) Analysis☆28Updated last week
- An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser☆45Updated 4 months ago
- Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics☆11Updated last year
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 5 years ago
- Creating package to draw proteins from Uniprot API☆34Updated last year
- An S3 data object and framework for common quantitative proteomic analyses☆40Updated last month
- Create QC and summary reports for Alevin output☆32Updated 3 months ago
- ☆14Updated 2 years ago
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated last year
- DEP package☆28Updated 2 years ago