Hocnonsense / vcontact2View external linksLinks
☆18Jan 14, 2024Updated 2 years ago
Alternatives and similar repositories for vcontact2
Users that are interested in vcontact2 are comparing it to the libraries listed below
Sorting:
- ☆14Feb 5, 2025Updated last year
- ☆18Dec 11, 2024Updated last year
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆13Mar 14, 2024Updated last year
- The viral taxonomic assignment pipeline☆42Feb 5, 2026Updated last week
- Unified Human Gut Virome Catalog☆41Nov 10, 2025Updated 3 months ago
- A pipeline for nanopore long-read metagenomic analysis.☆53Nov 26, 2025Updated 2 months ago
- ☆20Jul 14, 2022Updated 3 years ago
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆23Nov 24, 2025Updated 2 months ago
- ☆26Jun 20, 2023Updated 2 years ago
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆159Jun 16, 2025Updated 7 months ago
- Sorting and subsampling phylogenomic datasets☆28Apr 9, 2025Updated 10 months ago
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆26Updated this week
- CCTyper: Automatic detection and subtyping of CRISPR-Cas operons☆106Feb 15, 2024Updated 2 years ago
- dada2 formatted nifH database☆13May 17, 2024Updated last year
- ☆15Nov 11, 2025Updated 3 months ago
- Nature Communications | BASALT (Binning Across a Series of Assemblies Toolkit) for binning and refinement of short- and long-read sequenc…☆127Feb 8, 2026Updated last week
- ☆82Jan 16, 2026Updated 3 weeks ago
- ☆24Dec 5, 2018Updated 7 years ago
- Automatic eukaryotic taxonomic classification☆29May 9, 2025Updated 9 months ago
- R implementation of the LEfSe method☆63Nov 17, 2025Updated 2 months ago
- Binning Virus Genomes from Metagenomes☆70Jul 13, 2022Updated 3 years ago
- MYB transcription factors are one of the largest gene family in plants and control many processes. This repository provides additional ba…☆12Jul 11, 2025Updated 7 months ago
- HiFi-SR is a Python-based pipeline for the detection of plant mitochondrial structural rearrangements based on the mapping of PacBio high…☆10Apr 15, 2025Updated 10 months ago
- tiara – a tool for DNA sequence classification☆75Mar 2, 2024Updated last year
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Nov 21, 2019Updated 6 years ago
- ☆35Jun 26, 2025Updated 7 months ago
- Helper Functions for Interactive Tree Of Life (iTOL)☆182Nov 2, 2025Updated 3 months ago
- Variational autoencoder for metagenomic binning☆317Feb 2, 2026Updated last week
- Rapid comparison and dereplication of genomes☆326Nov 10, 2025Updated 3 months ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆87Dec 27, 2024Updated last year
- ☆12Aug 15, 2025Updated 6 months ago
- Gene Family Annotation Workflow☆11Mar 26, 2024Updated last year
- MegaSSR is a robust online server that identifies Simple Sequence Repeats (SSR) and enables the design of SSR markers in high-throughput …☆11Nov 25, 2024Updated last year
- Predicting Activated Sludge Microbial Communities based on time series of continuous sludge samples by using graph neural networks☆17Feb 2, 2026Updated last week
- Documentation and tutorials worth sharing.☆10Dec 7, 2022Updated 3 years ago
- Gene tree - species tree reconciliation from gene tree distributions☆40Nov 19, 2025Updated 2 months ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆43Feb 17, 2023Updated 2 years ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆366Aug 1, 2025Updated 6 months ago
- Front-end code for Serratus project website☆11Jul 2, 2024Updated last year