☆14Jun 1, 2026Updated 4 months ago
Alternatives and similar repositories for icefinder2
Users that are interested in icefinder2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- PowerBacGWAS: Power calculations for Bacterial GWAS☆13Feb 2, 2022Updated 4 years ago
- Target / Integrative Genetic Element Retriever: precisely maps IGEs (a defined type of genomic island) in bacterial and archaeal genomes;…☆20Sep 2, 2025Updated last year
- Three bacterial GWAS methods all rolled into one easy-to-use R package☆22Apr 16, 2024Updated 2 years ago
- Tool intended to pull out sequences and annotations between insertion sites specified by the user.☆15Apr 10, 2026Updated 6 months ago
- Automated discovery and curation of Auxiliary Metabolic Genes (AMGs), Auxiliary Regulatory Genes (AReGs), and Auxiliary Physiology Genes …☆23Oct 7, 2026Updated 2 weeks ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Pilea: profiling bacterial growth dynamics from metagenomes with sketching☆13Updated this week
- Scripts for antiSMASH/MiBIG data extraction and manipulation☆14May 23, 2024Updated 2 years ago
- Nucmer from Mummer3 followed by ggplot for nicer and more customisable genome alignment plots.☆12Feb 25, 2021Updated 5 years ago
- A pipeline for for large-scale analysis of antimicrobial resistance genes and their flanking regions in metagenomic datasets☆32Nov 9, 2025Updated 11 months ago
- ☆18Jan 12, 2026Updated 9 months ago
- PlasMAAG is a tool to recover plasmids and organisms from metagenomic samples☆33Sep 1, 2026Updated last month
- ☆18Jun 5, 2026Updated 4 months ago
- ☆120Oct 16, 2026Updated last week
- ☆19Apr 25, 2023Updated 3 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- snpless-nf - A Nextflow pipeline for time-course analysis with bacterial NGS whole-genome data.☆14May 12, 2024Updated 2 years ago
- A microbial genomic analysis pipeline used by the Djordjevic Lab☆14Feb 9, 2025Updated last year
- Bioinformatic Application for Quantification and LAbeling of VirAl taxonomy☆18Oct 7, 2026Updated 2 weeks ago
- Bioinformatics tool to find integrons in bacterial genomes☆95May 7, 2025Updated last year
- ☆36Nov 2, 2023Updated 2 years ago
- Pharokka is a rapid standardised annotation tool for bacteriophage genomes and metagenomes.☆237Updated this week
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆116Dec 5, 2025Updated 10 months ago
- ☆23Sep 19, 2025Updated last year
- zDB: comparative bacterial genomics made easy☆44Oct 1, 2026Updated 3 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- transposable element typing pipeline☆20Sep 28, 2026Updated 3 weeks ago
- Recording personal workflows used in work, study notes, and summaries of various tools and methods.☆11Oct 9, 2025Updated last year
- Altered version of PathoFact to work more conveniently with SLURM and large input files☆14Nov 7, 2024Updated last year
- ☆32Updated this week
- Systematic search of all known anti-phage systems.☆188Sep 1, 2026Updated last month
- Pipeline to create phage genome synteny graphics from genbank files☆22May 26, 2026Updated 4 months ago
- Phylogeny Enhanded Prediction of PAN-genome☆45Jul 17, 2020Updated 6 years ago
- Uses cDBG to count unitigs in bacterial populations☆20Feb 15, 2023Updated 3 years ago
- Python package to run DefensePredictor, a machine learning model to identify proteins involved in anti-phage defense☆58Apr 27, 2026Updated 5 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- CCTyper: Automatic detection and subtyping of CRISPR-Cas operons☆112Sep 15, 2026Updated last month
- Infer transmission clusters from SNP and timing data☆17May 20, 2020Updated 6 years ago
- ☆53Oct 5, 2026Updated 2 weeks ago
- ☆23Dec 11, 2024Updated last year
- Code repository accompanying the manuscript, Symbiont loss and gain, rather than co-diversification shapes honeybee gut microbiota divers…☆15Feb 21, 2025Updated last year
- ☆14Apr 25, 2026Updated 6 months ago
- The CRISPR assembler☆36May 13, 2021Updated 5 years ago