PacificBiosciences / HiFi-human-WGS-WDLLinks
☆75Updated 2 weeks ago
Alternatives and similar repositories for HiFi-human-WGS-WDL
Users that are interested in HiFi-human-WGS-WDL are comparing it to the libraries listed below
Sorting:
- Somatic structural variant caller for long-read data☆87Updated 2 months ago
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆71Updated 2 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆75Updated last year
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆78Updated 2 months ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆99Updated last month
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 5 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆82Updated 11 months ago
- A suite of tools for detecting expansions of short tandem repeats☆84Updated 2 years ago
- ENCODE long read RNA-seq pipeline☆51Updated 3 years ago
- GenMap - Fast and Exact Computation of Genome Mappability☆113Updated last year
- Helper scripts for biological data processing from Sentieon☆64Updated last week
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆119Updated 6 months ago
- QDNAseq package for Bioconductor☆54Updated last year
- ☆23Updated 4 years ago
- ☆49Updated 3 years ago
- Variant Calling Pipeline Using GATK4 and Nextflow☆58Updated 2 years ago
- FEELnc : FlExible Extraction of LncRNA☆93Updated 6 months ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆54Updated 3 months ago
- ☆60Updated 6 months ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆55Updated 5 years ago
- phasing and Allele Specific Expression from RNA-seq☆117Updated last year
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 8 months ago
- Stratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium…☆83Updated 3 years ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆99Updated last year
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆70Updated 2 years ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆72Updated last month
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago
- A tool for profiling long STRs from short reads☆104Updated 4 years ago
- An analysis pipeline for long-reads from both PacBio and Oxford Nanopore Technologies (ONT), written in Nextflow.☆41Updated this week