openwdl / learn-wdl
Educational materials for learning WDL
☆125Updated last year
Alternatives and similar repositories for learn-wdl:
Users that are interested in learn-wdl are comparing it to the libraries listed below
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆203Updated 4 years ago
- Documentation and description of AWS iGenomes S3 resource.☆113Updated 4 months ago
- IGV Web App☆120Updated this week
- A collection of reusable WDL tasks. Category:Other☆86Updated last week
- ☆82Updated 6 years ago
- Workflows for germline short variant discovery with GATK4☆134Updated 3 years ago
- A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM …☆194Updated 3 weeks ago
- GWAS Pipeline for H3Africa☆108Updated 2 weeks ago
- Extension for Jupyter which integrates igv.js☆154Updated 2 years ago
- A structural variation pipeline for short-read sequencing☆187Updated this week
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆157Updated 2 years ago
- A (mostly) universal methylation extractor for BS-seq experiments.☆170Updated 10 months ago
- A tool set for short variant discovery in genetic sequence data.☆196Updated 3 years ago
- Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools☆150Updated 2 years ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆268Updated last year
- Example Nextflow pipelines and programming techniques☆106Updated 4 months ago
- Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders☆142Updated this week
- GATK RNA-Seq Variant Calling in Nextflow☆133Updated 2 years ago
- The nimble & robust variant annotator☆176Updated 11 months ago
- ☆268Updated 2 months ago
- A Python package for pharmacogenomics (PGx) research☆71Updated 2 months ago
- Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing☆133Updated 5 years ago
- Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data☆209Updated 4 years ago
- Annotation and Ranking of Structural Variation☆252Updated last month
- tools for adding mutations to existing .bam files, used for testing mutation callers☆240Updated 6 months ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆374Updated last year
- Count bases in BAM/CRAM files☆315Updated 3 years ago
- Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel☆165Updated this week
- Plugins for the Ensembl Variant Effect Predictor (VEP)☆147Updated last week
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆215Updated 9 months ago