Alternatives and similar repositories for learn-wdl:

Users that are interested in learn-wdl are comparing it to the libraries listed below

• biowdl / tasks
  A collection of reusable WDL tasks. Category:Other
  ☆85Updated last week
• ndaniel / fusioncatcher
  Finder of Somatic Fusion Genes in RNA-seq data
  ☆145Updated last year
• ewels / AWS-iGenomes
  Documentation and description of AWS iGenomes S3 resource.
  ☆109Updated 2 months ago
• igvteam / igv-webapp
  IGV Web App
  ☆120Updated this week
• gagneurlab / drop
  Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders
  ☆139Updated this week
• dpryan79 / MethylDackel
  A (mostly) universal methylation extractor for BS-seq experiments.
  ☆169Updated 8 months ago
• ncbi / TPMCalculator
  TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files
  ☆128Updated 8 months ago
• parklab / NGSCheckMate
  Software program for checking sample matching for NGS data
  ☆128Updated 8 months ago
• g2nb / igv-jupyter
  Extension for Jupyter which integrates igv.js
  ☆154Updated 2 years ago
• lgmgeo / AnnotSV
  Annotation and Ranking of Structural Variation
  ☆239Updated this week
• stevekm / nextflow-demos
  Example Nextflow pipelines and programming techniques
  ☆105Updated 3 months ago
• gatk-workflows / gatk4-somatic-snvs-indels
  This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…
  ☆77Updated 4 years ago
• ga4gh / benchmarking-tools
  Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls
  ☆198Updated 3 years ago
• gatk-workflows / gatk4-germline-snps-indels
  Workflows for germline short variant discovery with GATK4
  ☆134Updated 3 years ago
• brentp / bwa-meth
  fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome
  ☆147Updated 6 months ago
• PapenfussLab / gridss
  GRIDSS: the Genomic Rearrangement IDentification Software Suite
  ☆266Updated last year
• broadinstitute / long-read-pipelines
  Long read production pipelines
  ☆144Updated this week
• hartwigmedical / hmftools
  Various algorithms for analysing genomics data
  ☆212Updated this week
• nf-core / raredisease
  Call and score variants from WGS/WES of rare disease patients.
  ☆94Updated last week
• htseq / htseq
  HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
  ☆100Updated 3 months ago
• bedops / bedops
  BEDOPS: high-performance genomic feature operations
  ☆316Updated last year
• dkoboldt / varscan
  Variant calling and somatic mutation/CNV detection for next-generation sequencing data
  ☆156Updated last year
• alimanfoo / pysamstats
  A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM …
  ☆194Updated this week
• AstraZeneca-NGS / VarDict
  VarDict
  ☆194Updated last year
• KarchinLab / open-cravat
  A modular annotation tool for genomic variants
  ☆118Updated last month
• stevekm / IGV-snapshot-automator
  Script to automatically create and run IGV snapshot batchscripts
  ☆140Updated 2 years ago
• nextflow-io / rnaseq-nf
  A proof of concept of RNAseq pipeline
  ☆76Updated 3 months ago
• pcingola / SnpEff
  ☆263Updated 3 weeks ago
• h3abionet / h3agwas
  GWAS Pipeline for H3Africa
  ☆108Updated last week
• Ensembl / VEP_plugins
  Plugins for the Ensembl Variant Effect Predictor (VEP)
  ☆144Updated this week