Alternatives and similar repositories for learn-wdl

Users that are interested in learn-wdl are comparing it to the libraries listed below

• ewels / AWS-iGenomes
  Documentation and description of AWS iGenomes S3 resource.
  ☆120Updated last year
• igvteam / igv-webapp
  IGV Web App
  ☆126Updated this week
• CRG-CNAG / CalliNGS-NF
  GATK RNA-Seq Variant Calling in Nextflow
  ☆137Updated 3 years ago
• dpryan79 / MethylDackel
  A (mostly) universal methylation extractor for BS-seq experiments.
  ☆176Updated last year
• genome / analysis-workflows
  Open workflow definitions for genomic analysis from MGI at WUSM.
  ☆104Updated 6 months ago
• gatk-workflows / gatk4-germline-snps-indels
  Workflows for germline short variant discovery with GATK4
  ☆139Updated 4 years ago
• gagneurlab / drop
  Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders
  ☆159Updated 3 weeks ago
• biowdl / tasks
  A collection of reusable WDL tasks. Category:Other
  ☆88Updated last month
• gatk-workflows / gatk4-data-processing
  Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools
  ☆160Updated 3 years ago
• konradjk / loftee
  ☆188Updated 2 years ago
• broadinstitute / long-read-pipelines
  Long read production pipelines
  ☆151Updated last week
• nf-core / test-datasets
  Test data to be used for automated testing with the nf-core pipelines
  ☆150Updated this week
• ENCODE-DCC / caper
  Cromwell/WDL wrapper for Python
  ☆58Updated 2 years ago
• nextflow-io / rnaseq-nf
  A proof of concept of RNAseq pipeline
  ☆83Updated 2 months ago
• Illumina / Nirvana
  The nimble & robust variant annotator
  ☆190Updated last year
• broadinstitute / gatk-sv
  A structural variation pipeline for short-read sequencing
  ☆200Updated this week
• broadinstitute / warp
  Warp Analysis Research Pipelines
  ☆224Updated this week
• h3abionet / h3agwas
  GWAS Pipeline for H3Africa
  ☆114Updated 8 months ago
• stevekm / nextflow-demos
  Example Nextflow pipelines and programming techniques
  ☆106Updated 4 months ago
• htseq / htseq
  HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
  ☆107Updated 7 months ago
• seqeralabs / nextflow-tutorial
  Nextflow training material for introductory tutorial
  ☆107Updated 3 years ago
• hartwigmedical / hmftools
  Various algorithms for analysing genomics data
  ☆262Updated this week
• CCDG / Pipeline-Standardization
  ☆82Updated 7 years ago
• zwdzwd / transvar
  TransVar - multiway annotator for precision medicine
  ☆126Updated 2 years ago
• davetang / learning_vcf_file
  Learning the Variant Call Format
  ☆147Updated 5 months ago
• freeseek / gtc2vcf
  Tools to convert Illumina IDAT/BPM/EGT/GTC and Affymetrix CEL/CHP files to VCF
  ☆162Updated 5 months ago
• ga4gh / benchmarking-tools
  Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls
  ☆208Updated 4 years ago
• KarchinLab / open-cravat
  A modular annotation tool for genomic variants
  ☆142Updated this week
• suhrig / arriba
  Fast and accurate gene fusion detection from RNA-Seq data
  ☆258Updated 4 months ago
• brentp / bwa-meth
  fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome
  ☆157Updated 5 months ago