OpenGene / MrBam
Query Mutated Reads from a Bam
☆26Updated 5 years ago
Related projects: ⓘ
- (No maintenance) Detect gene fusion directly from raw fastq files☆25Updated 7 years ago
- (No maintenance) Next Generation Sequencing Simulation with SNP, Variation and Sequencing Error Integrated☆24Updated 7 years ago
- Assembly Based ReAligner☆71Updated 6 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated last year
- Filtering and profiling of next-generational sequencing data using region-specific rules☆74Updated 10 months ago
- Pattern Recognition for Cell-free DNA☆58Updated 6 years ago
- identifying mutational significance in cancer genomes☆59Updated last year
- ☆78Updated 10 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆94Updated 2 years ago
- Documenting usage and experience with bioinformatic tools☆39Updated 9 years ago
- An awk-like VCF parser☆54Updated 8 months ago
- WISECONDOR (WIthin-SamplE COpy Number aberration DetectOR): Detect fetal trisomies and smaller CNV's in a maternal plasma sample using wh…☆44Updated 4 months ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 3 years ago
- 10x Genomics Reads Simulator☆45Updated 8 months ago
- Lima - Demultiplex Barcoded PacBio Samples☆65Updated 9 months ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆50Updated 3 years ago
- Comprehensive benchmark of structural variant callers☆42Updated 3 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆54Updated 7 years ago
- CNV screening and annotation tool☆24Updated 7 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆64Updated 2 weeks ago
- High-performance error correction for Illumina resequencing data☆68Updated 8 years ago
- A tool to call somatic single nucleotide variants.☆40Updated 9 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆106Updated 7 months ago
- Counts the number of reads which map to either the reference or alternate allele at each heterozygous SNP.☆23Updated 6 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated last year
- Breakpoints via assembly - Identifies breaks and attempts to assemble rearrangements in whole genome sequencing data.☆57Updated 2 months ago
- ☆58Updated this week
- Concordance and contamination estimator for tumor–normal pairs☆53Updated 4 years ago
- Data and information about the Polaris study☆52Updated 4 years ago
- ☆94Updated this week