awesome-bio-datasets
☆244Oct 28, 2017Updated 9 years ago
Alternatives and similar repositories for awesome-bio-datasets
Users that are interested in awesome-bio-datasets are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Query Mutated Reads from a Bam☆26Nov 26, 2018Updated 7 years ago
- Pattern Recognition for Cell-free DNA☆59Aug 3, 2018Updated 8 years ago
- (No maintenance) Next Generation Sequencing Simulation with SNP, Variation and Sequencing Error Integrated☆24Aug 10, 2017Updated 9 years ago
- Detect and visualize target mutations by scanning FastQ files directly☆157Feb 10, 2022Updated 4 years ago
- (No maintenance) Detect gene fusion directly from raw fastq files☆25Aug 13, 2017Updated 9 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Detect and visualize microsatellite instability(MSI) from NGS data☆33Jun 4, 2019Updated 7 years ago
- A simplified pipeline for ctDNA sequencing data analysis☆38Sep 23, 2017Updated 9 years ago
- (No maintenance) OpenGene, core libraries for NGS data analysis and bioinformatics in Julia☆66Jul 18, 2022Updated 4 years ago
- Gene fusion detection and visualization☆133Feb 21, 2022Updated 4 years ago
- Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data☆214May 14, 2020Updated 6 years ago
- Deduplication for cfDNA sequencing data☆11Jul 5, 2017Updated 9 years ago
- Please switch to https://github.com/OpenGene/defastq☆29Jul 28, 2018Updated 8 years ago
- A curated list of awesome Bioinformatics libraries and software.☆4,344Sep 27, 2026Updated last month
- Code to reproduce analysis and figures for 'Genetic mapping of etiologic brain cell types for obesity' (Timshel, eLife 2020)☆14May 20, 2021Updated 5 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- For original Nature Biotechnology Publication (Q1 2012)☆27Jul 9, 2017Updated 9 years ago
- PharmGKB NGS Pipeline☆19Oct 2, 2018Updated 8 years ago
- Generate unique KMERs for every contig in a FASTA file☆49Aug 17, 2022Updated 4 years ago
- Collection of notes and scripts related to NGS☆14Sep 2, 2026Updated last month
- Generate duplex/single consensus reads to reduce sequencing noises and remove duplications☆127Oct 27, 2023Updated 3 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆35Sep 25, 2026Updated last month
- Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis☆1,031Aug 24, 2024Updated 2 years ago
- Awk, bash, python scripts for processing NGS data☆14Nov 6, 2015Updated 10 years ago
- gTaxon - a fast cross-platform NCBI taxonomy data querying (gi2taxid, taxid2taxon, name2taxid, LCA) tool, with cmd client and REST API se…☆14Jul 24, 2016Updated 10 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆16Feb 18, 2018Updated 8 years ago
- Documentation for PEP specification and all PEPkit software☆10Updated this week
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Dec 13, 2019Updated 6 years ago
- Golang for Bioinformatics☆32Aug 16, 2016Updated 10 years ago
- Single cell Type Enrichment Analysis for Phenotypes (STEAP)☆14Jun 16, 2021Updated 5 years ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆166Mar 28, 2023Updated 3 years ago
- NAnostring quality Control dasHbOard.☆11Updated this week
- A nextflow implementation of Kallisto & Sleuth RNA-Seq Tools☆24Jun 3, 2018Updated 8 years ago
- A list of useful bioinformatics resources☆643May 4, 2026Updated 5 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,497Updated this week
- Predicting oncogenic potential of gene fusions☆12Feb 13, 2016Updated 10 years ago
- A fast lossless FASTQ compressor with ultra-high compression ratio☆157May 28, 2025Updated last year
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants☆18Mar 10, 2018Updated 8 years ago
- Somatic Variant Call for ctDNA☆11Mar 1, 2016Updated 10 years ago
- Format of GWAS summary statistics.☆12Jul 31, 2024Updated 2 years ago
- A list of deep learning implementations in biology☆2,164Sep 12, 2026Updated last month