Alternatives and similar repositories for awesome-bio-datasets

Users that are interested in awesome-bio-datasets are comparing it to the libraries listed below

• seandavi / awesome-cancer-variant-resources
  A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.
  ☆321Updated 11 months ago
• OpenGene / AfterQC
  Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
  ☆213Updated 5 years ago
• vanheeringen-lab / genomepy
  genes and genomes at your fingertips
  ☆407Updated 4 months ago
• burkesquires / python_biologist
  Python Programming for Biologists
  ☆145Updated last week
• Shivi91 / Rosalind-1
  Solutions to Rosalind Bioinformatics Problems
  ☆76Updated 12 years ago
• macarthur-lab / gene_lists
  List of gene lists for genomic analyses.
  ☆225Updated 3 years ago
• ISUgenomics / bioinformatics-workbook
  Bioinformatics Workbook repository
  ☆204Updated last month
• GangCaoLab / CoolBox
  Jupyter notebook based genomic data visualization toolkit.
  ☆249Updated 2 months ago
• harvardinformatics / bioinformatics-coffee-hour
  Short lessons from FAS Informatics coffee hour
  ☆154Updated 2 years ago
• BenLangmead / comp-genomics-class
  Code and examples for JHU Computational Genomics class
  ☆307Updated last year
• maxplanck-ie / snakepipes
  Customizable workflows based on snakemake and python for the analysis of NGS data
  ☆397Updated 2 weeks ago
• aquaskyline / Clairvoyante
  Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing
  ☆173Updated 2 years ago
• peterjc / biopython_workshop
  A basic introduction to Biopython, intended for a classroom based workshop. Now on Codeberg.
  ☆226Updated 5 years ago
• igordot / genomics
  A collection of scripts and notes related to genomics and bioinformatics
  ☆219Updated 2 months ago
• cbg-ethz / NGS-pipe
  NGS-pipe: next-generation sequencing pipelines for precision oncology
  ☆114Updated 6 years ago
• GoekeLab / bioinformatics-workflows
  minimal example implementations for bioinformatics workflow managers
  ☆280Updated 4 years ago
• bioinform / somaticseq
  An ensemble approach to accurately detect somatic mutations using SomaticSeq
  ☆203Updated last month
• j-andrews7 / awesome-bioinformatics-benchmarks
  A curated and summarized list of bioinformatics bench-marking papers and resources.
  ☆354Updated 3 months ago
• kipoi / models
  Model zoo for genomics
  ☆173Updated last month
• broadinstitute / viral-ngs
  viral-ngs: command line tools and wrappers for processing raw viral genomic data
  ☆193Updated last week
• macarthur-lab / clinvar
  This repo provides tools to convert ClinVar data into a tab-delimited flat file, and also provides that resulting tab-delimited flat file…
  ☆131Updated 5 years ago
• BaselAbujamous / clust
  Automatic and optimised consensus clustering of one or more heterogeneous datasets
  ☆167Updated 3 years ago
• simon-anders / htseq
  HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
  ☆129Updated 5 years ago
• vanheeringen-lab / seq2science
  Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workf…
  ☆167Updated 2 months ago
• CRG-CNAG / CalliNGS-NF
  GATK RNA-Seq Variant Calling in Nextflow
  ☆138Updated 3 years ago
• google / deepconsensus
  DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) …
  ☆255Updated 11 months ago
• crazyhottommy / DNA-seq-analysis
  DNA sequencing analysis notes from Ming Tang
  ☆149Updated 2 years ago
• bxlab / bx-python
  Tools for manipulating biological data, particularly multiple sequence alignments
  ☆159Updated last week
• sequana / sequana
  Sequana: a set of Snakemake NGS pipelines
  ☆152Updated 3 weeks ago
• Ensembl / VEP_plugins
  Plugins for the Ensembl Variant Effect Predictor (VEP)
  ☆165Updated this week