Alternatives and similar repositories for awesome-bio-datasets

Users that are interested in awesome-bio-datasets are comparing it to the libraries listed below

• seandavi / awesome-cancer-variant-resources
  A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.
  ☆318Updated 6 months ago
• vanheeringen-lab / genomepy
  genes and genomes at your fingertips
  ☆399Updated 4 months ago
• kipoi / models
  Model zoo for genomics
  ☆168Updated last year
• burkesquires / python_biologist
  Python Programming for Biologists
  ☆137Updated last week
• OpenGene / AfterQC
  Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
  ☆212Updated 5 years ago
• GangCaoLab / CoolBox
  Jupyter notebook based genomic data visualization toolkit.
  ☆247Updated 5 months ago
• macarthur-lab / gene_lists
  List of gene lists for genomic analyses.
  ☆222Updated 3 years ago
• crazyhottommy / DNA-seq-analysis
  DNA sequencing analysis notes from Ming Tang
  ☆146Updated 2 years ago
• maxplanck-ie / snakepipes
  Customizable workflows based on snakemake and python for the analysis of NGS data
  ☆397Updated 2 weeks ago
• ISUgenomics / bioinformatics-workbook
  Bioinformatics Workbook repository
  ☆192Updated 2 weeks ago
• cbg-ethz / NGS-pipe
  NGS-pipe: next-generation sequencing pipelines for precision oncology
  ☆114Updated 6 years ago
• harvardinformatics / bioinformatics-coffee-hour
  Short lessons from FAS Informatics coffee hour
  ☆152Updated 2 years ago
• GoekeLab / bioinformatics-workflows
  minimal example implementations for bioinformatics workflow managers
  ☆279Updated 3 years ago
• vanheeringen-lab / seq2science
  Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workf…
  ☆164Updated 4 months ago
• macarthur-lab / clinvar
  This repo provides tools to convert ClinVar data into a tab-delimited flat file, and also provides that resulting tab-delimited flat file…
  ☆126Updated 5 years ago
• igordot / genomics
  A collection of scripts and notes related to genomics and bioinformatics
  ☆219Updated 3 weeks ago
• simon-anders / htseq
  HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
  ☆126Updated 5 years ago
• BenLangmead / comp-genomics-class
  Code and examples for JHU Computational Genomics class
  ☆303Updated 10 months ago
• broadinstitute / warp
  Warp Analysis Research Pipelines
  ☆215Updated this week
• BIMSBbioinfo / janggu
  Deep learning infrastructure for genomics
  ☆257Updated 3 years ago
• Shivi91 / Rosalind-1
  Solutions to Rosalind Bioinformatics Problems
  ☆72Updated 11 years ago
• Ensembl / VEP_plugins
  Plugins for the Ensembl Variant Effect Predictor (VEP)
  ☆158Updated 3 weeks ago
• j-andrews7 / awesome-bioinformatics-benchmarks
  A curated and summarized list of bioinformatics bench-marking papers and resources.
  ☆345Updated 8 months ago
• griffithlab / pVACtools
  ☆160Updated last week
• ga4gh / benchmarking-tools
  Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls
  ☆204Updated 4 years ago
• konradjk / loftee
  ☆180Updated 2 years ago
• sigven / pcgr
  Personal Cancer Genome Reporter (PCGR)
  ☆270Updated last week
• broadinstitute / mutect
  MuTect -- Accurate and sensitive cancer mutation detection
  ☆100Updated 2 years ago
• bedops / bedops
  BEDOPS: high-performance genomic feature operations
  ☆351Updated 4 months ago
• kundajelab / atac_dnase_pipelines
  ATAC-seq and DNase-seq processing pipeline
  ☆166Updated 3 years ago