brwnj / umitoolsLinks
Tools to handle reads sequenced with unique molecular identifiers (UMIs).
☆30Updated 8 years ago
Alternatives and similar repositories for umitools
Users that are interested in umitools are comparing it to the libraries listed below
Sorting:
- Exon-exon splice junctions across SRA☆42Updated 4 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated 2 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆36Updated 3 years ago
- Run Picard on BAM files and collate 90 metrics into one file.☆40Updated 8 years ago
- Multi-sample somatic variant caller☆52Updated 3 years ago
- ☆33Updated 3 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 9 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 6 years ago
- Flexible Bayesian inference of mutational signatures☆36Updated 2 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆40Updated last year
- fast webservices based query tool for large sets of genomic features☆25Updated 5 months ago
- ☆35Updated 5 years ago
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- A small R package to make sequencing read coverage plots in R.☆39Updated 2 weeks ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆54Updated last week
- highly-efficient & lightweight mutation signature matrix aggregation☆19Updated 3 years ago
- ☆78Updated 11 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Fast fusion detection using kallisto☆79Updated 4 months ago
- Chromatin segmentation in R☆19Updated 7 years ago