A python interface for the CIViC db application
☆11Feb 19, 2026Updated last month
Alternatives and similar repositories for civicpy
Users that are interested in civicpy are comparing it to the libraries listed below
Sorting:
- CIViC is an open access, open source, community-driven web resource for Clinical Interpretation of Variants in Cancer☆30Mar 14, 2026Updated last week
- A user-friendly Python toolkit, which provides a comprehensive pipeline to easily explore the cohort-based mutational characterization fo…☆21Oct 27, 2022Updated 3 years ago
- Repo for advertising and organizing CIViC unconference/meeting activities☆10Jul 24, 2025Updated 7 months ago
- python module for querying the vicc knowledgebase integration datastore☆11Jul 6, 2023Updated 2 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 3 years ago
- RRSelection: A linkage disequilibrium method to detect selection region across population VCF☆14Feb 11, 2019Updated 7 years ago
- Computational identification of targets for CAR-T cell therapy in AML☆21Dec 25, 2022Updated 3 years ago
- Backend Server for CIViC Project☆39Jul 6, 2023Updated 2 years ago
- This is the GPress, a framework for querying GTF, GFF3 and expression files in a compressed form.☆11Oct 5, 2023Updated 2 years ago
- Algorithms and datastructures for phylogenetics☆14Dec 24, 2025Updated 2 months ago
- Web client for CIViC: Clinical Interpretations of Variants in Cancer☆50Nov 28, 2023Updated 2 years ago
- Documentation & Code for the community tool: 'Open Research Calendar'☆23Feb 19, 2026Updated last month
- Library to assist in the development of extractors for clowder.☆12Mar 18, 2025Updated last year
- Implementation of the SPDY protocol in ocaml☆14Oct 2, 2011Updated 14 years ago
- Parse samtools pileup file to get how many bases and what kind of bases are called☆14Apr 30, 2024Updated last year
- REcombination BARcode detector.☆16Apr 2, 2024Updated last year
- ☆10Mar 31, 2023Updated 2 years ago
- Filters for Next Generation Sequencing☆12Oct 31, 2024Updated last year
- Scripts used for generating Neale Lab UKB results☆20Oct 11, 2022Updated 3 years ago
- Get a nicely-chunked local copy of the biomedical literature (to use for other projects)!☆15Jun 10, 2024Updated last year
- A course in numerical methods with Python for engineers and scientists: currently 5 learning modules, with student assignments.☆10Dec 6, 2017Updated 8 years ago
- Coarse-graining library that implements Force-matching☆11Aug 31, 2020Updated 5 years ago
- A tool for extracting plain text and internal Wikipedia links from Wikipedia dumps☆11Apr 18, 2019Updated 6 years ago
- Python library & CLI to create, view and edit PFB files☆12Feb 19, 2026Updated last month
- Anno is a variant annotation tool☆24May 18, 2016Updated 9 years ago
- ZMQ API bindings for OCaml☆14Sep 20, 2011Updated 14 years ago
- ☆27Jun 4, 2023Updated 2 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Jan 28, 2026Updated last month
- Software used by Trinity CTAT for building CTAT Genome Libs, resource databases shared by Trinity CTAT components☆10Apr 28, 2025Updated 10 months ago
- repository for Fusion web components☆13Updated this week
- LAAVA: Long-read AAV Analysis☆13Dec 9, 2025Updated 3 months ago
- ☆23Aug 17, 2025Updated 7 months ago
- How to start with Jupyter, Python, Libs, Github and Models☆13May 18, 2022Updated 3 years ago
- Bacterial Genomics workflow for short(Illumina) and long-read (Oxford Nanopore) sequencing data☆12Feb 20, 2026Updated last month
- Objective Caml binding embedding the R interpreter☆23Nov 20, 2010Updated 15 years ago
- Keyword Extraction for Pathology Reports with BERT☆12Sep 2, 2020Updated 5 years ago
- SQL-like query language for the SAM/BAM file format☆29Sep 20, 2023Updated 2 years ago
- Concordance and contamination estimator for tumor–normal pairs☆59Oct 22, 2024Updated last year
- 基于flask+mysql+bootstrap的信息管理系统☆15Dec 11, 2023Updated 2 years ago