griffithlab / civicpyLinks
A python interface for the CIViC db application
☆11Updated last month
Alternatives and similar repositories for civicpy
Users that are interested in civicpy are comparing it to the libraries listed below
Sorting:
- ☆22Updated 3 weeks ago
- Interpretable prioritization of splice variants in diagnostic next-generation sequencing☆18Updated last year
- ☆29Updated 4 years ago
- ALOFT, the Annotation Of Loss-of-Function Transcripts, provides extensive functional annotations to loss-of-function variants in the hum…☆19Updated 5 years ago
- Variant catalogue pipeline☆26Updated 5 months ago
- pathoscore evaluates variant pathogenicity tools and scores.☆22Updated 3 years ago
- Filters for Next Generation Sequencing☆12Updated 11 months ago
- This BLENDER has been sunsetted☆16Updated last year
- Materials for Spring 2019 Applied Genomics Course☆21Updated 6 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- Deep learning-based structural variant filtering method☆39Updated last year
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- ☆12Updated 2 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆30Updated 4 years ago
- Accompanying analysis code for the FRASER manuscript☆26Updated 5 years ago
- Debarcer: A package for De-Barcoding and Error Correction of sequencing data containing molecular barcodes☆15Updated 4 years ago
- Using k-mers to call HLA alleles in RNA sequencing data☆23Updated 7 years ago
- Analyze antibody repertoires and discover new V genes from high-throughput sequencing reads☆16Updated last year
- ☆22Updated 2 years ago
- UVC, a very accurate small-variant caller (https://doi.org/10.1093/bib/bbab458)☆14Updated 4 months ago
- Allele-specific copy number estimation with whole genome sequencing☆23Updated last year
- Python package to annotate and visualize gene fusions.☆64Updated last year
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- ☆39Updated 3 months ago
- Platform for Oncogenomic Reporting and Interpretation (PORI)☆35Updated 3 weeks ago
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆19Updated last year
- python module for querying the vicc knowledgebase integration datastore☆11Updated 2 years ago
- Parse samtools pileup file to get how many bases and what kind of bases are called☆14Updated last year
- Repository for the Anczukow-Lab splicing pipeline☆16Updated 6 months ago
- Copy Number Methods for Detection and Genome Wide Association Tests☆22Updated 11 months ago