leekgroup / regionReportLinks
Generate HTML report for a set of genomic regions or DESeq2/edgeR results
☆10Updated 8 months ago
Alternatives and similar repositories for regionReport
Users that are interested in regionReport are comparing it to the libraries listed below
Sorting:
- RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows☆17Updated 3 years ago
- ☆23Updated last week
- Allele frequency filtering for Mendelian variant discovery☆18Updated 8 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆17Updated last year
- mitochondrial variant analysis tools☆15Updated 4 years ago
- materials and website for the 2016 kallisto sleuth workshop☆11Updated 8 years ago
- R package to quickly obtain count vectors from indexed bam files☆15Updated 3 months ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Updated 7 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- Interactive eQTL visualizations☆13Updated 2 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 6 months ago
- ClusterScan, search for clusters of features in a given annotation.☆11Updated 4 years ago
- Parse samtools pileup file to get how many bases and what kind of bases are called☆14Updated last year
- Pipeline to filter whole exome vcf files and generate a report document for clinical diagnostics.☆14Updated 5 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Clinical Variant Annotation Pipeline☆10Updated 5 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- Allele frequency filter app☆14Updated 3 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated this week
- Machine learning use cases for teaching☆13Updated 8 years ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Updated 3 weeks ago
- R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework☆17Updated 8 months ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Updated 4 years ago
- The official repository for the deepSNV bioconductor packages. Branch master tracks the official Bioconductor development branch.☆17Updated 3 years ago
- Bedfile perturbation tool☆17Updated last year
- ☆10Updated 10 years ago
- Toolkit for calling and analyzing de novo STR mutations☆14Updated last year
- amplicon/smMIP mapping and analysis pipeline☆11Updated 2 years ago
- Unfazed by genomic variant phasing☆27Updated last year