Alternatives and similar repositories for regionReport

Users that are interested in regionReport are comparing it to the libraries listed below

• gagneurlab / RNAseq-ASHG
  RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows
  ☆17Updated 3 years ago
• ImperialCardioGenetics / frequencyFilter
  Allele frequency filtering for Mendelian variant discovery
  ☆18Updated 8 years ago
• davemcg / SeeGEM
  Interactive table from gemini output
  ☆10Updated 6 years ago
• pyrevo / ClusterScan
  ClusterScan, search for clusters of features in a given annotation.
  ☆11Updated 4 years ago
• smped / ngsReports
  ☆23Updated 2 months ago
• ma-compbio / Weaver
  Allele-Specific Quantification of Structural Variations in Cancer Genomes
  ☆18Updated 6 years ago
• beroukhim-lab / ascets
  This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…
  ☆16Updated last year
• jamesware / alleleFrequencyApp
  Allele frequency filter app
  ☆14Updated 3 years ago
• seandavi / SRAdbV2
  R Interface to the NCBI SRA metadata
  ☆23Updated 6 years ago
• ssadedin / ximmer
  Ximmer is a system for CNV calling on exome and targeted genomic sequencing
  ☆19Updated 3 weeks ago
• gymreklab / STRDenovoTools
  Toolkit for calling and analyzing de novo STR mutations
  ☆14Updated last year
• databio / bedshift
  Bedfile perturbation tool
  ☆17Updated last year
• jbelyeu / unfazed
  Unfazed by genomic variant phasing
  ☆27Updated last year
• NCBI-Hackathons / HLAClustRView
  R package specialized in HLA typing clustering and visualization based on specific similarity metrics
  ☆14Updated 5 years ago
• koelling / amplimap
  amplicon/smMIP mapping and analysis pipeline
  ☆11Updated 2 years ago
• mikelove / asthma
  RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)
  ☆19Updated 7 years ago
• jmonlong / PopSV
  Population-based detection of structural variation from High-Throughput Sequencing.
  ☆32Updated 3 years ago
• SimoneTiberi / BANDITS
  BANDITS: Bayesian ANalysis of DIfferenTial Splicing
  ☆18Updated last year
• PersonalizedOncology / ClinVAP
  Clinical Variant Annotation Pipeline
  ☆10Updated 5 years ago
• churchill-lab / emase
  Expectation-Maximization algorithm for Allele-Specific Expression
  ☆21Updated 2 years ago
• riverlee / pileup2base
  Parse samtools pileup file to get how many bases and what kind of bases are called
  ☆14Updated last year
• lamortenera / bamsignals
  R package to quickly obtain count vectors from indexed bam files
  ☆15Updated 2 months ago
• pachterlab / kallisto-sleuth-workshop-2016
  materials and website for the 2016 kallisto sleuth workshop
  ☆11Updated 8 years ago
• gzhmat / ShinyCNV
  a Shiny/R application to view and annotate copy number variations
  ☆28Updated 2 years ago
• griffithlab / VAtools
  A set of tools to annotate VCF files with expression and readcount data
  ☆29Updated 5 months ago
• kkdey / Logolas
  R package for Enrichment Depletion Logos (EDLogos) and String Logos
  ☆27Updated 6 years ago
• uclahs-cds / tool-NFTest
  CLI to automate Nextflow pipeline testing
  ☆12Updated last week
• PreMedKB / PAnno
  PAnno is a Pharmacogenomics Annotation tool for clinical genomic testing.
  ☆14Updated 2 years ago
• statgen / fivex
  Interactive eQTL visualizations
  ☆13Updated 2 years ago
• quinlan-lab / bedqc
  BED QC tool (in the making)
  ☆16Updated 3 years ago