leekgroup / regionReportLinks
Generate HTML report for a set of genomic regions or DESeq2/edgeR results
☆10Updated 9 months ago
Alternatives and similar repositories for regionReport
Users that are interested in regionReport are comparing it to the libraries listed below
Sorting:
- RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows☆17Updated 3 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆18Updated last year
- Allele frequency filter app☆14Updated 3 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Updated 6 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 2 weeks ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆14Updated 5 years ago
- Clinical Variant Annotation Pipeline☆10Updated 5 years ago
- Allele frequency filtering for Mendelian variant discovery☆18Updated 9 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- ClusterScan, search for clusters of features in a given annotation.☆11Updated 4 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- ☆23Updated last month
- Bedfile perturbation tool☆17Updated last month
- Parse samtools pileup file to get how many bases and what kind of bases are called☆14Updated last year
- Machine learning use cases for teaching☆13Updated 8 years ago
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated 2 years ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆24Updated 7 years ago
- R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework☆17Updated 9 months ago
- ☆14Updated 3 weeks ago
- PAnno is a Pharmacogenomics Annotation tool for clinical genomic testing.☆15Updated 2 years ago
- R package to organise and standardise your genomic variant calls obtained with different callers.☆11Updated 6 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Updated 4 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- ☆10Updated 10 years ago
- Interactive table from gemini output☆10Updated 6 years ago
- CLI to automate Nextflow pipeline testing☆12Updated this week
- R package to quickly obtain count vectors from indexed bam files☆15Updated 4 months ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Updated 2 months ago
- amplicon/smMIP mapping and analysis pipeline☆11Updated 2 years ago