A tool for projecting genomic alignments to transcriptomic coordinates
☆37May 28, 2024Updated 2 years ago
Alternatives and similar repositories for mudskipper
Users that are interested in mudskipper are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆15May 22, 2026Updated 2 months ago
- A minimap2 implementation with binseq inputs☆18Dec 11, 2025Updated 8 months ago
- An efficient index for the colored, compacted, de Bruijn graph☆112Jun 19, 2026Updated last month
- toolkit to process gtf files☆17Dec 24, 2021Updated 4 years ago
- Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.☆40Jul 15, 2019Updated 7 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆15Nov 30, 2023Updated 2 years ago
- A Rust library for building modular, fast and compact indexes over genomic data☆12Nov 22, 2023Updated 2 years ago
- semi-reference-based short read compression☆11Mar 5, 2019Updated 7 years ago
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated last year
- ☆13Dec 1, 2021Updated 4 years ago
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated 2 years ago
- ☆20Aug 18, 2020Updated 5 years ago
- ntHash implementation in Rust☆36Jul 12, 2024Updated 2 years ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆11Mar 6, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- Seqnature: incorporate SNPs and Indels into a reference genome☆16Sep 6, 2016Updated 9 years ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Sep 1, 2021Updated 4 years ago
- Correction of palindromes in long reads from PacBio and Nanopore☆14Mar 1, 2022Updated 4 years ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆24Sep 12, 2025Updated 10 months ago
- long read RNA-seq quantification☆120Updated this week
- ☆19Jul 15, 2026Updated 3 weeks ago
- Rapid sensitive and accurate read mapping via quasi-mapping☆90Jun 5, 2020Updated 6 years ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆18Oct 12, 2025Updated 9 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash, UltraLogLog and ExaLogLog☆22Jul 29, 2026Updated last week
- Manager for multi-container computing environments☆26Mar 6, 2026Updated 5 months ago
- BigWig and BAM utilities☆103Mar 26, 2024Updated 2 years ago
- Hardware go brrr bounded context suffix array construction algorithm☆19Nov 1, 2023Updated 2 years ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Nov 27, 2019Updated 6 years ago
- GCLib - Genomic C++ library of reusable code for bioinformatics projects☆39Apr 10, 2026Updated 4 months ago
- A Python wrapper for the bbhash library for Minimal Perfect Hashing☆19Oct 26, 2025Updated 9 months ago
- Processing WGS aDNA data using the ReichLab protocol☆13Mar 8, 2019Updated 7 years ago
- an API for intersections of genomic data☆149Mar 12, 2026Updated 4 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Construct a Physical Map from Linked Reads☆19Apr 1, 2026Updated 4 months ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Jun 16, 2024Updated 2 years ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆51May 22, 2024Updated 2 years ago
- Emending Alignment of Spliced Transcript Reads☆12Jan 19, 2026Updated 6 months ago
- ☆21Dec 26, 2025Updated 7 months ago
- Differential k-mer analysis☆42Jan 29, 2024Updated 2 years ago
- a lexicographically-based GTF/GFF sorter☆39Updated this week