A tool for projecting genomic alignments to transcriptomic coordinates
☆37May 28, 2024Updated last year
Alternatives and similar repositories for mudskipper
Users that are interested in mudskipper are comparing it to the libraries listed below
Sorting:
- ☆15Mar 11, 2026Updated last week
- An efficient index for the colored, compacted, de Bruijn graph☆111Mar 11, 2026Updated last week
- toolkit to process gtf files☆17Dec 24, 2021Updated 4 years ago
- Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.☆40Jul 15, 2019Updated 6 years ago
- ☆15Nov 30, 2023Updated 2 years ago
- A Rust library for building modular, fast and compact indexes over genomic data☆12Nov 22, 2023Updated 2 years ago
- semi-reference-based short read compression☆11Mar 5, 2019Updated 7 years ago
- ☆12Dec 1, 2021Updated 4 years ago
- ☆20Aug 18, 2020Updated 5 years ago
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated last year
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated last year
- ntHash implementation in Rust☆36Jul 12, 2024Updated last year
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆11Mar 6, 2024Updated 2 years ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Sep 1, 2021Updated 4 years ago
- Seqnature: incorporate SNPs and Indels into a reference genome☆16Sep 6, 2016Updated 9 years ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆24Sep 12, 2025Updated 6 months ago
- A minimap2 implementation with binseq inputs☆17Dec 11, 2025Updated 3 months ago
- long read RNA-seq quantification☆106Updated this week
- Rapid sensitive and accurate read mapping via quasi-mapping☆90Jun 5, 2020Updated 5 years ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆18Oct 12, 2025Updated 5 months ago
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash and UltraLogLog☆20Jan 22, 2026Updated last month
- Manager for multi-container computing environments☆26Mar 6, 2026Updated 2 weeks ago
- Correction of palindromes in long reads from PacBio and Nanopore☆14Mar 1, 2022Updated 4 years ago
- Hardware go brrr bounded context suffix array construction algorithm☆19Nov 1, 2023Updated 2 years ago
- BigWig and BAM utilities☆103Mar 26, 2024Updated last year
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Nov 27, 2019Updated 6 years ago
- GCLib - Genomic C++ library of reusable code for bioinformatics projects☆39Jul 12, 2025Updated 8 months ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Jun 16, 2024Updated last year
- Construct a Physical Map from Linked Reads☆18Updated this week
- A reimplementation of the WaveFront Alignment algorithm at low memory☆50May 22, 2024Updated last year
- an API for intersections of genomic data☆147Mar 12, 2026Updated last week
- ☆21Dec 26, 2025Updated 2 months ago
- Efficient querying of biological databases☆42Oct 27, 2025Updated 4 months ago
- Differential k-mer analysis☆40Jan 29, 2024Updated 2 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆143Aug 24, 2025Updated 6 months ago
- Squeakr: An Exact and Approximate k -mer Counting System☆86Feb 23, 2025Updated last year
- Iterate over minimizers of a DNA sequence☆32Jul 12, 2024Updated last year