OceanGenomics / mudskipperLinks
A tool for projecting genomic alignments to transcriptomic coordinates
☆36Updated last year
Alternatives and similar repositories for mudskipper
Users that are interested in mudskipper are comparing it to the libraries listed below
Sorting:
- Digenome-toolkit ver2.☆16Updated 3 years ago
- The Zavolab Automated RNA-seq Pipeline☆35Updated last month
- ☆32Updated last year
- Immuological gene typing and annotation for genome assembly☆37Updated 2 months ago
- Analysis software for Nanorate Sequencing (NanoSeq) experiments☆17Updated 4 months ago
- Fast FASTQ sample demultiplexing in Rust.☆62Updated last week
- Long-read Isoform Quantification and Analysis☆39Updated 2 months ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆59Updated 3 weeks ago
- Polyidus provides a framework to catch chimeric DNA sequences with a tale of python☆8Updated last year
- Automated Detection and Qualification of Differential Methylation☆14Updated last year
- ☆22Updated 2 weeks ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆60Updated 7 months ago
- a lexicographically-based GTF/GFF sorter☆34Updated last month
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆29Updated 2 weeks ago
- Master of Pores 2☆23Updated 6 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆53Updated 7 months ago
- ☆18Updated last month
- Version II of Mandalorion☆32Updated 6 years ago
- Tool package to perform in-silico CRISPR analysis and assessment☆27Updated last year
- curPrimers is a tool for trimming primer sequences from amplicon based NGS reads☆16Updated last week
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated 9 months ago
- Location of public benchmarking; primarily final results☆18Updated 3 months ago
- ☆40Updated 8 months ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated last year
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector☆20Updated 3 months ago
- A program for the analysis of single cell nanopore long read data☆19Updated 2 months ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated last year
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 4 years ago
- ☆22Updated 5 months ago