SiyuanHuang1 / ST_Analysis_HandbookLinks
A Guide to the Analysis of Spatial Transcriptomics
☆12Updated last year
Alternatives and similar repositories for ST_Analysis_Handbook
Users that are interested in ST_Analysis_Handbook are comparing it to the libraries listed below
Sorting:
- Cell clustering and communication network inference for single-cell transcriptomics☆14Updated last year
- spatialDLPFC project involving Visium (n = 30), Visium SPG (n = 4) and snRNA-seq (n = 19) samples☆28Updated last month
- ☆41Updated 2 years ago
- This repo is not maintained anymore, please refer to: https://github.com/rnacentre/BrainCellAtlas_reproducibility.☆20Updated last year
- ☆32Updated 10 months ago
- ☆12Updated 5 years ago
- ☆48Updated 2 months ago
- A package that performs cell type annotations on single cell resolution of spatial transcriptomics data, find the niche interactions and …☆14Updated last month
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆80Updated 8 months ago
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆53Updated last year
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆53Updated last year
- ☆22Updated 2 years ago
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆41Updated 11 months ago
- ☆14Updated 5 months ago
- VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps☆47Updated last year
- Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information☆23Updated 3 years ago
- A public clone of the HypoMap Figure & analysis repository.☆11Updated 3 years ago
- ☆34Updated 2 months ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆39Updated 2 years ago
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆38Updated last year
- Unsupervised Inference of Developmental Directions for Single Cells☆22Updated last year
- CeLEry: cell location recovery in single-cell RNA sequencing☆35Updated 10 months ago
- Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…☆31Updated 3 years ago
- ☆15Updated 10 months ago
- Spatial transcriptomics of heart tissue☆28Updated 3 years ago
- a simple R data package for curated cancer pathway-specific gene lists☆13Updated 5 years ago
- analysis scripts related to Jin et al manuscript on scRNA seq in aging mouse brain☆20Updated last year
- Accurate and fast cell marker gene identification with COSG☆54Updated 2 weeks ago
- ☆30Updated 8 months ago
- ☆61Updated 2 years ago