Schemata and libraries for neuroscientific data
☆35Sep 17, 2025Updated 9 months ago
Alternatives and similar repositories for pipeline
Users that are interested in pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code for Inception Loop 2019 Paper☆19Dec 12, 2019Updated 6 years ago
- Python TIFF Stack Reader for ScanImage 5 scans (including multiROI).☆13May 2, 2022Updated 4 years ago
- Foundation neural network☆35Jan 8, 2026Updated 5 months ago
- A companion website for DataJoint☆10Feb 13, 2026Updated 4 months ago
- up-to-date code for model-based inference of spike trains from calcium imaging☆24Apr 16, 2018Updated 8 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Mesoscale activity ephys ingest schema☆11Jul 18, 2023Updated 2 years ago
- first version☆15Jan 8, 2022Updated 4 years ago
- A toolbox for inferring spikes from calcium traces.☆23Jun 16, 2023Updated 3 years ago
- Analysis code for the OpenScope Credit Assignment project.☆13Jul 9, 2024Updated last year
- Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.☆25Nov 7, 2022Updated 3 years ago
- Docker image for MySQL configured to work with DataJoint☆18Sep 3, 2024Updated last year
- a repository containing everything relevant to our fast non-negative deconvolution work☆35Nov 28, 2016Updated 9 years ago
- dataset info for the neurofinder challenge☆13Aug 3, 2016Updated 9 years ago
- Relational data pipelines for the science lab☆42May 14, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Distribution Alignment Decoder (DAD)☆16Dec 22, 2017Updated 8 years ago
- Keras network for spike detection from calcium traces☆12Jul 7, 2020Updated 5 years ago
- Tools, algorithms, and frameworks for managing and analyzing neural data.☆21Mar 21, 2022Updated 4 years ago
- Code published with the paper J. Mölter, L. Avitan, and G. J. Goodhill. "Detecting neural assemblies in calcium imaging data". BMC Biolog…☆11Apr 30, 2019Updated 7 years ago
- Revealing neural correlates of behavior without behavioral measurements☆18Nov 18, 2019Updated 6 years ago
- Preprocess EyeLink pupillometry data using the FieldTrip toolbox☆16Nov 10, 2018Updated 7 years ago
- Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSF☆117Jun 28, 2026Updated last week
- Relational Workflows: where database schemas define executable data pipelines.☆193Jun 26, 2026Updated last week
- Demo on chaining together LFP simulation (neurodsp), spectral parameterization (fooof), and simulation-based inference (sbi).☆13Jul 8, 2025Updated 11 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆21Aug 2, 2021Updated 4 years ago
- spike extraction from calcium signals (Deneux et al., 2016)☆36Apr 9, 2020Updated 6 years ago
- Recordings of 10k neurons during spontaneous behaviors☆55Mar 22, 2024Updated 2 years ago
- Automatic cell detection in microscopy data using convolutional networks☆34Nov 22, 2022Updated 3 years ago
- Denoising and Demixing Pipeline for in vivo Voltage Imaging Data (SGPMD-NMF)☆15Apr 24, 2023Updated 3 years ago
- Python-based module for extracting from, converting between, and handling optical imaging data from several file formats. Inspired by Spi…☆18Updated this week
- The code takes as an input a time series vector of calcium observationsand produces samples from the posterior distribution of the underl…☆21Oct 21, 2016Updated 9 years ago
- [ECCV 2024] "Elucidating the Hierarchical Nature of Behavior with Masked Autoencoders"☆29Nov 13, 2025Updated 7 months ago
- ACRE: Abstract Causal REasoning Beyond Covariation☆19Dec 7, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A Matlab application for electrophysiology data analysis☆22Apr 4, 2025Updated last year
- ☆15Mar 21, 2024Updated 2 years ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆101Nov 14, 2024Updated last year
- Web app for viewing results of ephys spike sorting☆29Sep 4, 2025Updated 10 months ago
- Pipelines and modules for processing optical physiology data☆11Dec 20, 2024Updated last year
- A Python toolbox for Fast Image Signal Separation Analysis, designed for Calcium Imaging data.☆34May 25, 2026Updated last month
- The Batch Electroencephalography Automated Processing Platform (BEAPP)☆40Sep 15, 2025Updated 9 months ago