Schemata and libraries for neuroscientific data
☆35Sep 17, 2025Updated 10 months ago
Alternatives and similar repositories for pipeline
Users that are interested in pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Foundation neural network☆36Jan 8, 2026Updated 6 months ago
- Code for Inception Loop 2019 Paper☆19Dec 12, 2019Updated 6 years ago
- Python TIFF Stack Reader for ScanImage 5 scans (including multiROI).☆13May 2, 2022Updated 4 years ago
- A companion website for DataJoint☆10Feb 13, 2026Updated 5 months ago
- up-to-date code for model-based inference of spike trains from calcium imaging☆24Apr 16, 2018Updated 8 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Mesoscale activity ephys ingest schema☆11Jul 18, 2023Updated 3 years ago
- A toolbox for inferring spikes from calcium traces.☆23Jun 16, 2023Updated 3 years ago
- Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.☆25Nov 7, 2022Updated 3 years ago
- first version☆15Jan 8, 2022Updated 4 years ago
- spike extraction from calcium signals (Deneux et al., 2016)☆36Apr 9, 2020Updated 6 years ago
- A Python toolbox for Fast Image Signal Separation Analysis, designed for Calcium Imaging data.☆34Jul 13, 2026Updated 2 weeks ago
- Pipelines and modules for processing optical physiology data☆11Dec 20, 2024Updated last year
- Relational data pipelines for the science lab☆42May 14, 2026Updated 2 months ago
- Docker image for MySQL configured to work with DataJoint☆18Sep 3, 2024Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- dataset info for the neurofinder challenge☆13Aug 3, 2016Updated 9 years ago
- GUI to compute and explore receptive fields, primarily from calcium imaging recordings☆13Jun 26, 2021Updated 5 years ago
- Match suite2p ROIs between imaging sessions☆28Apr 12, 2019Updated 7 years ago
- Distribution Alignment Decoder (DAD)☆16Dec 22, 2017Updated 8 years ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆101Nov 14, 2024Updated last year
- Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSF☆118Updated this week
- Tools, algorithms, and frameworks for managing and analyzing neural data.☆21Mar 21, 2022Updated 4 years ago
- High-throughput Detection of Neurons for Brain-wide analysis with Deep Learning☆18Feb 21, 2022Updated 4 years ago
- Functions to assess quality of spike sorting results☆35Sep 6, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Predictive coding networks for temporal prediction☆20Mar 20, 2024Updated 2 years ago
- Main repo for the Boss API☆21Nov 21, 2024Updated last year
- The Batch Electroencephalography Automated Processing Platform (BEAPP)☆40Sep 15, 2025Updated 10 months ago
- WIP: Python port of Kilosort2☆49Jul 8, 2023Updated 3 years ago
- Code published with the paper J. Mölter, L. Avitan, and G. J. Goodhill. "Detecting neural assemblies in calcium imaging data". BMC Biolog…☆11Apr 30, 2019Updated 7 years ago
- Revealing neural correlates of behavior without behavioral measurements☆18Nov 18, 2019Updated 6 years ago
- Preprocess EyeLink pupillometry data using the FieldTrip toolbox☆16Nov 10, 2018Updated 7 years ago
- BandRatios project repository: Electrophysiological Frequency Band Ratio Measures Conflate Periodic and Aperiodic Neural Activity.☆14Oct 29, 2023Updated 2 years ago
- A generalized model fitting pipeline that houses models, trainers, and datasets in datajoint and returns as well as stores trained models…☆20Apr 9, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Demo on chaining together LFP simulation (neurodsp), spectral parameterization (fooof), and simulation-based inference (sbi).☆13Jul 8, 2025Updated last year
- ☆11Nov 2, 2023Updated 2 years ago
- Control and design of two-photon photostimulation experiments☆18Jan 1, 2024Updated 2 years ago
- A Matlab application for electrophysiology data analysis☆22Apr 4, 2025Updated last year
- a visualization method for neural data☆256Apr 4, 2025Updated last year
- Recordings of 10k neurons during spontaneous behaviors☆55Mar 22, 2024Updated 2 years ago
- Denoising and Demixing Pipeline for in vivo Voltage Imaging Data (SGPMD-NMF)☆15Apr 24, 2023Updated 3 years ago